View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6936_low_9 (Length: 381)
Name: NF6936_low_9
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 207 - 367
Target Start/End: Complemental strand, 48968978 - 48968818
Alignment:
| Q |
207 |
tttgaatcaaaagctaatgagtgtttaattttagttgattaagaatttgttaaccgaggagtgttacaaatttggtcaaacaaaccgtcctttatttaga |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48968978 |
tttgaatcaaaagctaatgagtgtttaattttagttgattaagaatttgttaaccgaggagtgttacaaatttggtcaaacgaaccgtcctttatttaga |
48968879 |
T |
|
| Q |
307 |
aaaatgattcttgaactggcgttccttcttaaacgagaacccatcacctcaaggtggtatt |
367 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48968878 |
aaaatgatttttaaactggcgttccttcttaaacgagaacccatcacctcaaggtggtatt |
48968818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 48969153 - 48969009
Alignment:
| Q |
9 |
aaaagaaatacattggatgtgtaaacgttttcgcacattatacgataaatagtaaattctaaaaattccggaagnnnnnnnnnncaaattctaaattaaa |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48969153 |
aaaagaaatacattggaggtgtaaacgttttcgcacattatacgataaatagtaaattctaaaaattccggaagaaaaaaaaaacaaattctaaattaaa |
48969054 |
T |
|
| Q |
109 |
attaaactctgattcaatgtaatgtactacaagtacattccccctacctc |
158 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48969053 |
attaaactctgattc-----aatgtactacaagtacattccccctacctc |
48969009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University