View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6937_high_1 (Length: 426)
Name: NF6937_high_1
Description: NF6937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6937_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 28928324 - 28928726
Alignment:
| Q |
1 |
tgtgagtattagtggaaatcctttaggttgcagagaatggactagctatcatgttgatagtgaaccgacctggcaatgaatttcttgccaagtgttgata |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28928324 |
tgtgagtgttagtggaaatcctttaggttgcagagaatggactagctatcatgttgacagtgaaccgacatggcaatgaatttcttgccaagtgttgata |
28928423 |
T |
|
| Q |
101 |
gagttaggctccaatgaaatgcatggtattggaagagtattaatgtcactaagttttgtgtcaatgttcgagattctttgcagcataatctttggggtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28928424 |
gagttaggctccaatgaaatgcatggtattggaagactattaatgtcactaagttttgtgtcaatgttcgagattctttgcagcataatctttggggtct |
28928523 |
T |
|
| Q |
201 |
ttgggtaatgatatgagtcccaaagccatttttgcctaggatcaatgtatagctttggagttgtcttggaacaatgatatgggtgtcactgcagcaaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28928524 |
ttgggtaatgatatgagtcccaaagtcatttttgcctaggatcaatgtatagctttggagttgtcttgga------atatgggtgtcactgcggcaaatt |
28928617 |
T |
|
| Q |
301 |
atgctagtaatgcttatttgactcgttctcggctttgggcttaacttacttcccttaagggttgtttacctcgaaggtaatggatgtgcagataaacttg |
400 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
28928618 |
atgctagtaattcttatttgaatcgttctcggctttgggcttaacttactcccctttagggttgtttaccttaaaggtaatggatgtgcagacaaacttg |
28928717 |
T |
|
| Q |
401 |
tcaatcatg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
28928718 |
tcaatcatg |
28928726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University