View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6937_high_5 (Length: 249)
Name: NF6937_high_5
Description: NF6937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6937_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 44488557 - 44488716
Alignment:
| Q |
88 |
gtaataaactacttttttgaaagtgttacaataaaatattaaaaaatagtgtattccttcaaaacnnnnnnnnn---ttgtgtattgttagcagttcatg |
184 |
Q |
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| T |
44488557 |
gtaataaactacttttttgaaagtgttacaataaaatattaaaaaatagtgtattccttcaaaaaaaaaaaaaagaatagtgtattgttagcagttcatg |
44488656 |
T |
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| Q |
185 |
gtgtagttaaatattgtcctggcctttctaatgctataggtgttcctccttcttctctct |
244 |
Q |
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| T |
44488657 |
gtgtagttaaatattgtcctggcctttctaatgctataggtgttcctccttcttttctct |
44488716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 44488506 - 44488551
Alignment:
| Q |
15 |
gacatcaattg-tagtatattgttttcaaaacaaaaacaaacaata |
59 |
Q |
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| T |
44488506 |
gacatcaattggtagtatattgttttcaaaacaaaaacaaacaata |
44488551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 44467292 - 44467342
Alignment:
| Q |
170 |
tgttagcagttcatggtgtagttaaatattg-tcctggcctttctaatgct |
219 |
Q |
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| T |
44467292 |
tgttagcatttcatggtttagttaaatattgctcctggcctttctaatgct |
44467342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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