View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6937_low_10 (Length: 231)

Name: NF6937_low_10
Description: NF6937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6937_low_10
NF6937_low_10
[»] scaffold0503 (1 HSPs)
scaffold0503 (14-222)||(11775-11983)
[»] chr3 (35 HSPs)
chr3 (14-222)||(53070798-53071006)
chr3 (123-222)||(18440232-18440331)
chr3 (123-222)||(19485306-19485405)
chr3 (72-203)||(45796785-45796916)
chr3 (72-222)||(49390007-49390153)
chr3 (121-219)||(20630472-20630570)
chr3 (81-203)||(23413630-23413752)
chr3 (72-219)||(1465747-1465891)
chr3 (121-203)||(14497131-14497213)
chr3 (121-219)||(17538032-17538124)
chr3 (166-219)||(5206700-5206753)
chr3 (166-219)||(14507806-14507859)
chr3 (166-219)||(15932551-15932604)
chr3 (166-219)||(17548612-17548665)
chr3 (166-219)||(40806898-40806951)
chr3 (166-219)||(41173416-41173469)
chr3 (166-219)||(43890081-43890134)
chr3 (167-219)||(13031823-13031875)
chr3 (121-219)||(13026671-13026763)
chr3 (121-219)||(22307618-22307710)
chr3 (166-219)||(11886855-11886908)
chr3 (166-219)||(17043998-17044051)
chr3 (166-219)||(17520067-17520120)
chr3 (166-219)||(17534864-17534917)
chr3 (166-219)||(18700771-18700824)
chr3 (166-219)||(30175611-30175664)
chr3 (166-219)||(40811713-40811766)
chr3 (166-219)||(8898876-8898930)
chr3 (72-152)||(12269285-12269362)
chr3 (166-219)||(21618272-21618326)
chr3 (14-91)||(22110453-22110530)
chr3 (166-219)||(24153448-24153502)
chr3 (166-219)||(36166378-36166432)
chr3 (166-219)||(5214820-5214873)
chr3 (166-219)||(22307699-22307752)
[»] chr4 (18 HSPs)
chr4 (22-222)||(6190274-6190474)
chr4 (14-182)||(21815730-21815898)
chr4 (72-203)||(3514829-3514960)
chr4 (100-222)||(21815865-21815987)
chr4 (72-203)||(15869083-15869214)
chr4 (72-203)||(32850999-32851130)
chr4 (72-219)||(13844243-13844387)
chr4 (112-219)||(19857222-19857329)
chr4 (72-219)||(15098989-15099133)
chr4 (72-219)||(361895-362039)
chr4 (166-219)||(44102076-44102130)
chr4 (166-219)||(10357578-10357631)
chr4 (166-219)||(35812534-35812587)
chr4 (166-219)||(18215602-18215655)
chr4 (166-219)||(52312292-52312346)
chr4 (166-219)||(10357494-10357547)
chr4 (166-219)||(19609182-19609235)
chr4 (123-152)||(46642598-46642627)
[»] scaffold0034 (1 HSPs)
scaffold0034 (14-222)||(51984-52192)
[»] chr6 (15 HSPs)
chr6 (14-222)||(18456517-18456736)
chr6 (14-222)||(18461677-18461896)
chr6 (14-176)||(18821945-18822108)
chr6 (100-222)||(18822081-18822203)
chr6 (72-219)||(25956958-25957102)
chr6 (134-219)||(18319535-18319620)
chr6 (112-203)||(27850833-27850924)
chr6 (166-219)||(17742991-17743044)
chr6 (166-222)||(23017252-23017308)
chr6 (166-219)||(1595331-1595385)
chr6 (166-219)||(16133733-16133786)
chr6 (166-219)||(18708402-18708455)
chr6 (166-219)||(19444343-19444396)
chr6 (184-219)||(27573394-27573429)
chr6 (184-219)||(31733650-31733685)
[»] scaffold0056 (1 HSPs)
scaffold0056 (14-222)||(79429-79637)
[»] chr2 (18 HSPs)
chr2 (22-222)||(32452038-32452238)
chr2 (166-219)||(9974827-9974880)
chr2 (166-219)||(19202301-19202354)
chr2 (166-219)||(22689582-22689635)
chr2 (166-219)||(22694178-22694231)
chr2 (166-219)||(24435955-24436008)
chr2 (166-218)||(5032461-5032513)
chr2 (166-219)||(6478347-6478400)
chr2 (166-219)||(24781960-24782013)
chr2 (121-219)||(356940-357032)
chr2 (168-215)||(6576142-6576189)
chr2 (166-219)||(23712339-23712393)
chr2 (166-219)||(21316810-21316863)
chr2 (14-91)||(22413239-22413315)
chr2 (166-219)||(23969645-23969698)
chr2 (166-219)||(24782002-24782055)
chr2 (166-219)||(24883364-24883417)
chr2 (121-157)||(7672482-7672518)
[»] chr8 (18 HSPs)
chr8 (14-204)||(19801526-19801716)
chr8 (72-219)||(38550328-38550472)
chr8 (72-222)||(39833623-39833769)
chr8 (72-219)||(20982962-20983106)
chr8 (72-219)||(27472625-27472769)
chr8 (123-219)||(13428427-13428523)
chr8 (121-219)||(1323458-1323558)
chr8 (166-222)||(19801719-19801775)
chr8 (166-219)||(24713123-24713176)
chr8 (166-219)||(39937107-39937160)
chr8 (166-219)||(18833230-18833283)
chr8 (166-219)||(19127893-19127946)
chr8 (121-152)||(24713207-24713238)
chr8 (166-219)||(15203557-15203611)
chr8 (121-218)||(19127936-19128027)
chr8 (166-219)||(26225575-26225629)
chr8 (166-219)||(45291022-45291076)
chr8 (178-219)||(18760332-18760373)
[»] chr7 (29 HSPs)
chr7 (14-176)||(12756816-12756978)
chr7 (72-219)||(37727874-37728018)
chr7 (72-219)||(9390033-9390177)
chr7 (72-219)||(17232269-17232413)
chr7 (72-222)||(6170439-6170586)
chr7 (72-217)||(45847960-45848102)
chr7 (139-219)||(14270435-14270515)
chr7 (140-203)||(1543467-1543530)
chr7 (161-219)||(8468133-8468191)
chr7 (166-219)||(8852262-8852315)
chr7 (166-219)||(38227286-38227339)
chr7 (167-219)||(11066328-11066380)
chr7 (166-218)||(32300904-32300956)
chr7 (166-219)||(12371204-12371257)
chr7 (166-219)||(12371246-12371299)
chr7 (166-219)||(13150675-13150728)
chr7 (166-219)||(20619145-20619198)
chr7 (166-219)||(20619187-20619240)
chr7 (166-219)||(44116333-44116387)
chr7 (166-219)||(48273172-48273226)
chr7 (166-219)||(61516-61569)
chr7 (166-219)||(13150633-13150686)
chr7 (166-219)||(14183721-14183774)
chr7 (166-211)||(18075582-18075627)
chr7 (166-219)||(18875946-18875999)
chr7 (167-219)||(20110336-20110389)
chr7 (166-219)||(36686297-36686350)
chr7 (166-219)||(48811739-48811792)
chr7 (100-132)||(1543476-1543508)
[»] scaffold0031 (2 HSPs)
scaffold0031 (14-182)||(20523-20691)
scaffold0031 (100-222)||(20658-20780)
[»] scaffold0716 (1 HSPs)
scaffold0716 (72-203)||(4516-4647)
[»] scaffold0075 (2 HSPs)
scaffold0075 (72-203)||(8669-8800)
scaffold0075 (166-219)||(52250-52304)
[»] scaffold0192 (2 HSPs)
scaffold0192 (101-203)||(9701-9803)
scaffold0192 (100-133)||(9722-9755)
[»] chr1 (22 HSPs)
chr1 (72-219)||(43542758-43542902)
chr1 (72-222)||(28194786-28194933)
chr1 (72-219)||(41305924-41306068)
chr1 (73-222)||(20636542-20636688)
chr1 (72-219)||(35982016-35982160)
chr1 (123-218)||(43697015-43697110)
chr1 (123-219)||(46382940-46383036)
chr1 (166-219)||(431541-431594)
chr1 (166-217)||(35088379-35088430)
chr1 (14-91)||(16368387-16368463)
chr1 (166-219)||(41227790-41227843)
chr1 (14-91)||(50686555-50686631)
chr1 (167-219)||(20587632-20587684)
chr1 (167-219)||(20592170-20592222)
chr1 (121-152)||(35088503-35088534)
chr1 (184-219)||(48300765-48300800)
chr1 (166-219)||(13528855-13528908)
chr1 (166-219)||(20316210-20316263)
chr1 (166-215)||(20634671-20634720)
chr1 (166-219)||(23967551-23967604)
chr1 (166-222)||(40388972-40389029)
chr1 (14-46)||(41050137-41050169)
[»] scaffold0235 (2 HSPs)
scaffold0235 (72-203)||(13180-13311)
scaffold0235 (72-203)||(24882-25012)
[»] scaffold0098 (1 HSPs)
scaffold0098 (72-203)||(34767-34898)
[»] chr5 (8 HSPs)
chr5 (72-222)||(5889496-5889643)
chr5 (67-222)||(21741873-21742025)
chr5 (158-222)||(29915436-29915500)
chr5 (166-219)||(21309063-21309116)
chr5 (184-219)||(19920617-19920652)
chr5 (166-219)||(14047903-14047957)
chr5 (166-219)||(20918273-20918327)
chr5 (166-219)||(32027175-32027229)
[»] scaffold0116 (1 HSPs)
scaffold0116 (72-219)||(44121-44265)
[»] scaffold0810 (1 HSPs)
scaffold0810 (112-219)||(2685-2792)
[»] scaffold1792 (1 HSPs)
scaffold1792 (72-219)||(36-179)
[»] scaffold0230 (2 HSPs)
scaffold0230 (72-219)||(20790-20934)
scaffold0230 (72-219)||(23721-23864)
[»] scaffold0029 (1 HSPs)
scaffold0029 (72-203)||(74469-74600)
[»] scaffold0035 (1 HSPs)
scaffold0035 (72-219)||(106205-106349)
[»] scaffold0045 (1 HSPs)
scaffold0045 (112-203)||(47049-47140)
[»] scaffold0064 (1 HSPs)
scaffold0064 (166-219)||(57702-57755)
[»] scaffold0047 (1 HSPs)
scaffold0047 (166-219)||(77988-78041)
[»] scaffold0036 (1 HSPs)
scaffold0036 (166-219)||(78449-78502)
[»] scaffold0737 (3 HSPs)
scaffold0737 (167-219)||(6786-6838)
scaffold0737 (166-219)||(6701-6754)
scaffold0737 (14-46)||(1899-1931)
[»] scaffold0853 (1 HSPs)
scaffold0853 (166-219)||(2936-2989)
[»] scaffold0507 (1 HSPs)
scaffold0507 (170-219)||(3025-3074)
[»] scaffold0375 (2 HSPs)
scaffold0375 (166-219)||(9399-9452)
scaffold0375 (166-219)||(9441-9494)
[»] scaffold0371 (1 HSPs)
scaffold0371 (166-219)||(2785-2838)
[»] scaffold0188 (1 HSPs)
scaffold0188 (166-219)||(698-751)
[»] scaffold0117 (1 HSPs)
scaffold0117 (166-219)||(41286-41339)
[»] scaffold0111 (3 HSPs)
scaffold0111 (166-219)||(7216-7269)
scaffold0111 (166-219)||(14335-14388)
scaffold0111 (166-219)||(14400-14453)
[»] scaffold0450 (1 HSPs)
scaffold0450 (166-218)||(13586-13638)
[»] scaffold0010 (1 HSPs)
scaffold0010 (14-78)||(60817-60880)
[»] scaffold1351 (1 HSPs)
scaffold1351 (121-152)||(1402-1433)
[»] scaffold0509 (1 HSPs)
scaffold0509 (184-219)||(9915-9950)
[»] scaffold0001 (1 HSPs)
scaffold0001 (121-152)||(76737-76768)
[»] scaffold0134 (1 HSPs)
scaffold0134 (118-152)||(10258-10292)
[»] scaffold0106 (1 HSPs)
scaffold0106 (166-219)||(15478-15532)
[»] scaffold1633 (1 HSPs)
scaffold1633 (166-219)||(156-209)
[»] scaffold1403 (1 HSPs)
scaffold1403 (14-91)||(494-570)
[»] scaffold0080 (1 HSPs)
scaffold0080 (166-219)||(59650-59703)
[»] scaffold0061 (1 HSPs)
scaffold0061 (166-219)||(19516-19569)


Alignment Details
Target: scaffold0503 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 11983 - 11775
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11983 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgagatg 11884  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggc 213  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11883 ggagagagcttgattctctgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatgggggc 11784  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  11783 ttgatgtcc 11775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 53070798 - 53071006
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53070798 agatgaaggatgatgtttcaatttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 53070897  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  53070898 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatgctgtgagagcctatttacgctcaatacgatgagggc 53070997  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  53070998 ttgatgtcc 53071006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 18440232 - 18440331
Alignment:
Q  123 ttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||||||||||||||||||||||||||||||  | || ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  18440232 ttgatgctctgtaatgtatatttatacataatttgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 18440331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 19485306 - 19485405
Alignment:
Q  123 ttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||||||||||||||||||||||||||||||  | || ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  19485306 ttgatgctctgtaatgtatatttatacataatttgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 19485405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 45796916 - 45796785
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || ||| |||||||||||||  ||||||  |||||||| ||| |||||||||||||||||||||||||||||| |||  | |||||||||||||    
T  45796916 tgttaggatgttaagtccattgcatattcataatctgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 45796817  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| ||||| ||||||||||||||||||||    
T  45796816 ttgatgctctgggagcctatttacgctcaata 45796785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 49390007 - 49390153
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| ||||||| |||||||||| |||  ||||   |||| || |||||||||||||||||||||||||||||||||||| | || || |||||||    
T  49390007 tgttaagatgttgagttcattgcatactcatt-tacgt--tgggtgacagcttgatgctctgtaatgtatatttatacataatatgtgaaggtagagggc 49390103  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||||||    
T  49390104 ttgatgctctgagagcctatttacgctcaatacg-ttggggcttgatgtcc 49390153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 20630472 - 20630570
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  20630472 gcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 20630570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 23413630 - 23413752
Alignment:
Q  81 gttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactc 180  Q
    |||||||||||||||||  ||||||  |||||||| ||| |||||||||||| ||||||||||||||||| |||  | |||||||||||||||||| |||    
T  23413630 gttgagtccattgcatattcataatctgagatgggggagggcttgatgctctataatgtatatttatacacaatctgagatgggagagggcttgatgctc 23413729  T
Q  181 tgagagcctatttacgctcaata 203  Q
    |  ||||||||||||||||||||    
T  23413730 taggagcctatttacgctcaata 23413752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 1465747 - 1465891
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| |||||||||||||||||||||||||| |||||||| | || ||||||| |     
T  1465747 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttaaacataatatgtgaagggagagaga 1465843  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| ||||||||||| |||||||| | |||||||||||||    
T  1465844 ttgatgctctgtgagcctatttaagctcaataagttgggggcttgatg 1465891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 14497213 - 14497131
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaata 203  Q
    ||||||| |||||||||||||||||||||| |||  | ||| |||||||||||||| ||||| ||||||||||||||||||||    
T  14497213 gcttgatactctgtaatgtatatttatacacaatctgagataggagagggcttgatgctctgggagcctatttacgctcaata 14497131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 17538124 - 17538032
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||| |||||||||||||||||||||| || |        ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  17538124 gcttgatgccctgtaatgtatatttatacatattatgtt------gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17538032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 5206700 - 5206753
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  5206700 gagggtttgatgccctgtgagcctatttacgctcaatacgatgggggcttgatg 5206753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 14507859 - 14507806
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  14507859 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 14507806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 15932551 - 15932604
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  15932551 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 15932604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 17548612 - 17548665
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  17548612 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17548665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 40806951 - 40806898
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  40806951 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 40806898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 41173416 - 41173469
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  41173416 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 41173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 43890081 - 43890134
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  43890081 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 43890134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 13031823 - 13031875
Alignment:
Q  167 agggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  13031823 agggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 13031875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 13026671 - 13026763
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||| |||||||||||||||||||||| || |        ||||||||||| |  || |||||||||||||||||||||| |||||||||||||    
T  13026671 gcttgatgccctgtaatgtatatttatacatattatgtt------gagggcttgatgccttgtgagcctatttacgctcaatacgttgggggcttgatg 13026763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 22307618 - 22307710
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||| |||||||||||||||||||||| || |        ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  22307618 gcttgatgccctgtaatgtatatttatacatattatgtt------gagggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 22307710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 11886855 - 11886908
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| || || |||||||||||||||||||| | |||||||||||||    
T  11886855 gagggcttgatgctatgtgagcctatttacgctcaatatgttgggggcttgatg 11886908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 17044051 - 17043998
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  17044051 gagggtttgattccctgtgagcctatttacgctcaatacgttgggggcttgatg 17043998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 17520067 - 17520120
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  17520067 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17520120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 17534864 - 17534917
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  17534864 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17534917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 18700771 - 18700824
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||| |||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  18700771 gaggtcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 18700824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 30175611 - 30175664
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  30175611 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 30175664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 40811766 - 40811713
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  40811766 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 40811713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 8898930 - 8898876
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  8898930 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 8898876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 12269362 - 12269285
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacata 152  Q
    |||||||| ||||||||||||||||||   | ||   || |||| ||| |||||||||||||||||||| |||||||||||    
T  12269362 tgttaagatgttgagtccattgcatac---ttatttaagttgggtgagggcttgatgctctgtaatgtacatttatacata 12269285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 21618326 - 21618272
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  21618326 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 21618272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 22110453 - 22110530
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatg-ttctaaaatgttaagaagttgagtccat 91  Q
    ||||||||||||||||||||| |||||||||||  | ||||| |||| || |||||| ||||||||  |||||||||||    
T  22110453 agatgaaggatgatgttccaaattattggatttata-taagaggtcgttgtttctaagatgttaagttgttgagtccat 22110530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 24153448 - 24153502
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  24153448 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 24153502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 36166432 - 36166378
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  36166432 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 36166378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 5214873 - 5214820
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||||||||||||| |||||| | |||||||||||||    
T  5214873 gagggcttgatgccctgtgagcctatttacgttcaatatgttgggggcttgatg 5214820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 22307699 - 22307752
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| || | ||||||||||||||||| |||||||||||||    
T  22307699 gagggcttgatgccctgtgaacatatttacgctcaatacgttgggggcttgatg 22307752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 6190474 - 6190274
Alignment:
Q  22 gatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatgggagagag 121  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  6190474 gatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaaggagttgagtccattgcatacgcataatacgagatggtagagag 6190375  T
Q  122 cttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtc 221  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6190374 cttgatgctctgtaatgtatatttatacataatacacgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatgggggcttgatgtc 6190275  T
Q  222 c 222  Q
    |    
T  6190274 c 6190274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 21815730 - 21815898
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21815730 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattacatacgcataatacgagatg 21815829  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctg 182  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||    
T  21815830 ggagagagcttgatgctctgtaatgtatatttatacataacacgagatgggagagagcttgatgctctg 21815898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 3514960 - 3514829
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  3514960 tgttaagatgttgagtccattgcatactcataatacgagatgggagagggcttgatgatctgtaatgtatatttatacataatacgagatgggagagggc 3514861  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| | ||||||||||||||||||||||||    
T  3514860 ttgatgcactgagagcctatttacgctcaata 3514829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 21815865 - 21815987
Alignment:
Q  100 cataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctc 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||    
T  21815865 cataacacgagatgggagagagcttgatgctctgtaatgtatatttatacataacacacgatgggagagggcttgatgctatgagagcctatttacgctc 21815964  T
Q  200 aatacgatgggggcttgatgtcc 222  Q
    |||||||||||||||||||||||    
T  21815965 aatacgatgggggcttgatgtcc 21815987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 15869083 - 15869214
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || |||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15869083 tgttaggatgttgagtccattgcatactcataatacgtgatgggggagggcttgatgctctgtaatgtatatttatacataatacgagatgggagagggc 15869182  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| || | |||||||||||||||||||||    
T  15869183 ttgatgctataagagcctatttacgctcaata 15869214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 32851130 - 32850999
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || |||||||||||||||||  ||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||  | |||||||||||||    
T  32851130 tgttaggatgttgagtccattgcatattcataatatgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 32851031  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| ||||| ||||||||||||||||||||    
T  32851030 ttgatgctctgggagcctatttacgctcaata 32850999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 13844387 - 13844243
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || |||||||| |    
T  13844387 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagaggac 13844291  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| ||||||||||| |||||||||| |||||||||||||    
T  13844290 ttgatgctctgtgagcctatttaagctcaatacgttgggggcttgatg 13844243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 19857329 - 19857222
Alignment:
Q  112 tgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggg 211  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||||| | |||||    
T  19857329 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggg 19857230  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  19857229 gcttgatg 19857222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 15099133 - 15098989
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||| | |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||| |||||     
T  15099133 tgttaaaatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggggagggt 15099037  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  15099036 ttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatg 15098989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 362039 - 361895
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||||||  ||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||| ||    
T  362039 tgttaagatattgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagagc 361943  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||||||||    
T  361942 ttgatgctctgtgagcctatttacactcaatatgttgggggcttgatg 361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 44102130 - 44102076
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||||||||||    
T  44102130 gagggcttgatgccctgagagcctatttacgctcaaatacgttgggggcttgatg 44102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 10357578 - 10357631
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  10357578 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 10357631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 35812534 - 35812587
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| |  || |||||||||||||||||||||| |||||||||||||    
T  35812534 gagggcttgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 35812587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 18215602 - 18215655
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaa-tacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  18215602 gagggcttgatgccctg-gagcctatttacgctcaaatacgatgggggcttgatg 18215655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 52312346 - 52312292
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| ||||| |||||||||||||||| |||||| ||||| |||||||    
T  52312346 gagggcttgatgctctgggagcctatttacgctcaaatacgttggggacttgatg 52312292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 10357494 - 10357547
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  10357494 gagggtttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 10357547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 19609235 - 19609182
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| ||||| |||  ||||||||||||||||| ||| |||||||||    
T  19609235 gagggcttgatgctctgtgagtttatttacgctcaatacgttggaggcttgatg 19609182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 46642627 - 46642598
Alignment:
Q  123 ttgatgctctgtaatgtatatttatacata 152  Q
    ||||||||||||||||||||||||||||||    
T  46642627 ttgatgctctgtaatgtatatttatacata 46642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 51984 - 52192
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51984 agataaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaaggagttgagtccattgcatacgcataatacgagatg 52083  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggc 213  Q
    | ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||     
T  52084 gtagatagcttgatgctctgtaatgtatatttatacataacacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatggggga 52183  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  52184 ttgatgtcc 52192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 18456736 - 18456517
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18456736 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaggaagttgagtccattgcatacgcataatacgagatg 18456637  T
Q  114 gga-----------gagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaat 202  Q
    |||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18456636 ggaacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatcctctgagagcctatttacgctcaat 18456537  T
Q  203 acgatgggggcttgatgtcc 222  Q
    ||||||||||||||||||||    
T  18456536 acgatgggggcttgatgtcc 18456517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 18461896 - 18461677
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18461896 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaggaagttgagtccattgcatacgcataatacgagatg 18461797  T
Q  114 gga-----------gagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaat 202  Q
    |||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18461796 ggaacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatcctctgagagcctatttacgctcaat 18461697  T
Q  203 acgatgggggcttgatgtcc 222  Q
    ||||||||||||||||||||    
T  18461696 acgatgggggcttgatgtcc 18461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 18821945 - 18822108
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaa-gtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagat 112  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18821945 agatgaaggatgatgttccaatttattggatttgtattaagaaagtcgatgttctaaaatgttgagaagttgagtccattgcatacgcataatacgagat 18822044  T
Q  113 gggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgat 176  Q
    || |||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||    
T  18822045 ggtagagagcttgatgctctgtaatgtatatttatacataatatgtgatggtagagagcttgat 18822108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 18822081 - 18822203
Alignment:
Q  100 cataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctc 199  Q
    ||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  18822081 cataatatgtgatggtagagagcttgatgctttgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctc 18822180  T
Q  200 aatacgatgggggcttgatgtcc 222  Q
    |||||||||||||||||||||||    
T  18822181 aatacgatgggggcttgatgtcc 18822203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 25956958 - 25957102
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  25956958 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 25957054  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  25957055 ttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatg 25957102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 18319620 - 18319535
Alignment:
Q  134 taatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||||||||||||||| | ||||||||||||||| ||||  |||||||||||||||||||| | || ||||||||||    
T  18319620 taatgtatatttatacataatacgcaaagggagagggcttgatgctcttggagcctatttacgctcaatatgttgagggcttgatg 18319535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 27850924 - 27850833
Alignment:
Q  112 tgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaata 203  Q
    |||| ||| |||||||||||| |||||||||||| |||||| |||| || ||||||||||||||| ||||  ||||||||||||||||||||    
T  27850924 tgggtgagggcttgatgctctataatgtatatttgtacatagtacgtgaggggagagggcttgatgctctatgagcctatttacgctcaata 27850833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 17743044 - 17742991
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| ||||  |||||||||||||||||||||| |||||||||||||    
T  17743044 gagggcttgatgctctaggagcctatttacgctcaatacgttgggggcttgatg 17742991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 23017252 - 23017308
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||| ||||| | ||| |||||||||||||||||||||| ||||||||||||||||    
T  23017252 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 23017308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 1595385 - 1595331
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||||||||||    
T  1595385 gagggcttgatgccctgagagcctatttacgctcaaatacgttgggggcttgatg 1595331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 16133733 - 16133786
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||| ||||||||| |||||||||||||    
T  16133733 gagggcttgatgccctgtgagcctatttactctcaatacgttgggggcttgatg 16133786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 18708455 - 18708402
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||| |||||| ||||| |||||||||||||||||||||| || ||||||||||    
T  18708455 gaggtcttgatgctctgtgagcctatttacgctcaatacgttgagggcttgatg 18708402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 19444343 - 19444396
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||| ||||||||| |||||||||||||    
T  19444343 gagggcttgatgccctgtgagcctatttacactcaatacgttgggggcttgatg 19444396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 27573394 - 27573429
Alignment:
Q  184 gagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||||||||||||||| |||||||||||||    
T  27573394 gagcctatttacgctcaatacgttgggggcttgatg 27573429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 31733685 - 31733650
Alignment:
Q  184 gagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||||||||||||||| |||||||||||||    
T  31733685 gagcctatttacgctcaatacgttgggggcttgatg 31733650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 79429 - 79637
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    ||||||||||| |||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||    
T  79429 agatgaaggataatgttccaatttattggattagtaataagaagtcgatgttataaaatgttaagaagttgagtccattgcatacgcataatacatgatg 79528  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggc 213  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  79529 gtagagagcttgatgctctgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaataagatgggggc 79628  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  79629 ttgatgtcc 79637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 32452038 - 32452238
Alignment:
Q  22 gatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatgggagagag 121  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  32452038 gatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaaggagttgagtccattgcatacgcataatacgagatggtagagag 32452137  T
Q  122 cttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtc 221  Q
    |||||||||||||||||||||||||||||||| |  |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32452138 cttgatgctctgtaatgtatatttatacataaaaaacgatggtagagggattgatgctctgagagcctatttacgctcaatacgatgggggcttgatgtc 32452237  T
Q  222 c 222  Q
    |    
T  32452238 c 32452238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 9974880 - 9974827
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  9974880 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 9974827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 19202301 - 19202354
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  19202301 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 19202354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 22689635 - 22689582
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  22689635 gagggcttgattccctgtgagcctatttacgctcaatacgttgggggcttgatg 22689582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 22694231 - 22694178
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  22694231 gagggcttgattccctgtgagcctatttacgctcaatacgttgggggcttgatg 22694178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 24436008 - 24435955
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  24436008 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 24435955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 5032461 - 5032513
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgat 218  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||    
T  5032461 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgat 5032513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 6478347 - 6478400
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  6478347 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 6478400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 24781960 - 24782013
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  24781960 gagggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 24782013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 357032 - 356940
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||| |||||||||||||||||||||| || |        ||||||||||| | ||| ||||||||||| |||||||||| || ||||||||||    
T  357032 gcttgatgccctgtaatgtatatttatacatattatgtt------gagggcttgatgccctgtgagcctatttatgctcaatacgttgagggcttgatg 356940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 6576189 - 6576142
Alignment:
Q  168 gggcttgatactctgagagcctatttacgctcaatacgatgggggctt 215  Q
    ||||||||| | ||| |||||||||||||||||||||| |||||||||    
T  6576189 gggcttgatgccctgggagcctatttacgctcaatacgttgggggctt 6576142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 23712339 - 23712393
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  23712339 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 23712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 21316810 - 21316863
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||||||||||| |||| ||||| |||||||||||||    
T  21316810 gagggcttgatgccctgtgagcctatttatgctctatacgttgggggcttgatg 21316863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 22413239 - 22413315
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccat 91  Q
    ||||||| ||||||||||||| |||||||||||  | ||||| ||| ||||| ||| ||||||||  |||||||||||    
T  22413239 agatgaaagatgatgttccaaattattggatttata-taagaggtcaatgttttaagatgttaagttgttgagtccat 22413315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 23969645 - 23969698
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  23969645 gagggtttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 23969698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 24782002 - 24782055
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| |  || ||||||||||||| |||||||| |||||||||||||    
T  24782002 gagggcttgatgccatgtgagcctatttacgttcaatacgttgggggcttgatg 24782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 24883417 - 24883364
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||| ||||||||| || ||||||||||    
T  24883417 gagggcttgatgcactgtgagcctatttacactcaatacgttgagggcttgatg 24883364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 7672482 - 7672518
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacg 157  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  7672482 gcttgatgccctgtaatgtatatttatacatattacg 7672518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 19801526 - 19801716
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    ||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19801526 agatgaaggatgatgttccaacttatttgatttgtgttaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 19801625  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatac 204  Q
    | |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  19801626 gtagagagcttgatgctctgtattgtatctttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatac 19801716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 38550328 - 38550472
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| ||||||||||||||||||  ||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  38550328 tgttaagatgttgagtccattgcatacttatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 38550424  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  38550425 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 38550472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 39833769 - 39833623
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||  ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  39833769 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgatggcttgatgctctgtaatgtatatttatacataatatgagaagggagagggc 39833673  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||| ||||| |||||||||||||||||||||| | ||||||||||||||    
T  39833672 ttgatgctctgtgagcctatttacgctcaatacg-ttggggcttgatgtcc 39833623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 20982962 - 20983106
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| || |||||||||||||||||||||||||||||||||||| | || |||||||||     
T  20982962 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgaaagcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggg 20983058  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||  |||| |||||||||||||||||||| | |||||| ||||||    
T  20983059 ttgatgttctgtgagcctatttacgctcaatatgttgggggtttgatg 20983106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 27472625 - 27472769
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||| ||||||||| |||  ||||   |||| ||| ||||||||||||||||| ||||||||||||||||| | || ||||||||||    
T  27472625 tgttaagatgttgagtctattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatatatatttatacataatatgtgaagggagagggc 27472721  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||||||||    
T  27472722 ttgatgctctgtgagcctatttacactcaatatgttgggggcttgatg 27472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 13428427 - 13428523
Alignment:
Q  123 ttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||||||||||||||||||||||| | || |||| ||| |||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  13428427 ttgatgctctgtaatgtatatttatacataatatgtgaagggaaaggacttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 13428523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 1323458 - 1323558
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgg--gagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgat 218  Q
    ||||||||||||||||||||||||||||||||||| | || ||  |||||||||||||  |||| |||| ||||||||||||||| | ||||||||||||    
T  1323458 gcttgatgctctgtaatgtatatttatacataatatgtgaagggagagagggcttgatgatctgtgagcttatttacgctcaatatgttgggggcttgat 1323557  T
Q  219 g 219  Q
    |    
T  1323558 g 1323558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 19801719 - 19801775
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  19801719 gagggcttgatgttctgagagcctatttacgctcaatacgatgggggcttgatgtcc 19801775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 24713176 - 24713123
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  24713176 gagggcttgataccctgtgagcctatttacgctcaatacgttgggggcttgatg 24713123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 39937107 - 39937160
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  39937107 gagggcttgatgccctgcgagcctatttacgctcaatacgttgggggcttgatg 39937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 18833283 - 18833230
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||| | |||||||||||||    
T  18833283 gagggcttgatgccctgggagcctatttacgctcaatatgttgggggcttgatg 18833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 19127946 - 19127893
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||||||  || ||||||||||||||||||||||  ||||||||||||    
T  19127946 gagggcttgataccatgtgagcctatttacgctcaatacgtcgggggcttgatg 19127893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 24713238 - 24713207
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacata 152  Q
    ||||||||||||||||||||||||||||||||    
T  24713238 gcttgatgctctgtaatgtatatttatacata 24713207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 15203557 - 15203611
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  15203557 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 15203611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 19128027 - 19127936
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgat 218  Q
    ||||||||| |||||||||||||||||||||| || |        ||||||||||| | ||| || ||||||||||||||||||| || |||||||||    
T  19128027 gcttgatgccctgtaatgtatatttatacatattatgtt------gagggcttgatgccctgtgatcctatttacgctcaatacgttgagggcttgat 19127936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 26225575 - 26225629
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  26225575 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 26225629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 45291022 - 45291076
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  45291022 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 45291076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 18760373 - 18760332
Alignment:
Q  178 ctctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  18760373 ctctgtgagcctatttacgctcaatacattgggggcttgatg 18760332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 12756816 - 12756978
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12756816 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgctaagaagttgagtccattgcatacgcataatacgagatg 12756915  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgat 176  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12756916 ggagagagcttgatgctctgtattgtatatttatacataatacgcgatgggagagggcttgat 12756978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 37727874 - 37728018
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||||||||||||||||||||||||||||||||||||||| | || |||||||||     
T  37727874 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagagcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggt 37727970  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||  |||||||||||||||||||||| |||||||||||||    
T  37727971 ttgatgctctttgagcctatttacgctcaatacgttgggggcttgatg 37728018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 9390033 - 9390177
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||||||  ||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  9390033 tgttaagatattgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 9390129  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  9390130 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 9390177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 17232413 - 17232269
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||||    
T  17232413 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctatgtaatgtatatttatacataatatgtgaagggagagggc 17232317  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  17232316 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 17232269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 6170439 - 6170586
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| |||||||||||| |||||||||||||||||||||| | || ||||||||||    
T  6170439 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctataatgtatatttatacataatatgtgaagggagagggc 6170535  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||| ||||  |||||||||||||||||||||| ||||| ||||||||||    
T  6170536 ttgatgctctatgagcctatttacgctcaatacgttggggacttgatgtcc 6170586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 45847960 - 45848102
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| | |||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||  ||||||    
T  45847960 tgttaagatgctgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaaggttgagggc 45848056  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttga 217  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||    
T  45848057 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttga 45848102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 14270435 - 14270515
Alignment:
Q  139 tatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  14270435 tatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 14270515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 1543467 - 1543530
Alignment:
Q  140 atatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaata 203  Q
    |||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  1543467 atatttatacataatacgagatgggagagggcttgatgctctaggagcctatttacgctcaata 1543530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 8468191 - 8468133
Alignment:
Q  161 tgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  8468191 tgggtgagggcttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 8468133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 8852262 - 8852315
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  8852262 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 8852315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 38227339 - 38227286
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  38227339 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 38227286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 11066380 - 11066328
Alignment:
Q  167 agggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  11066380 agggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 11066328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 32300956 - 32300904
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgat 218  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||    
T  32300956 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgat 32300904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 12371257 - 12371204
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||||||||||| |||||||||| |||||||||||||    
T  12371257 gagggcttgatgccctgtgagcctatttatgctcaatacgttgggggcttgatg 12371204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 12371299 - 12371246
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  12371299 gagggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 12371246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 13150675 - 13150728
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||| |||||||||    
T  13150675 gagggcttgatgccctgtgagcctatttacgctcaatacgttggaggcttgatg 13150728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 20619198 - 20619145
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||  |||||||||||||||||||||| |||||||||||||    
T  20619198 gagggcttgatgccctatgagcctatttacgctcaatacgttgggggcttgatg 20619145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 20619240 - 20619187
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  20619240 gagggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 20619187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 44116387 - 44116333
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  44116387 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 44116333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 48273226 - 48273172
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  48273226 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 48273172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 61516 - 61569
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||  |||| ||||||||||||||||| |||||||||||||    
T  61516 gagggcttgatgccctatgagcatatttacgctcaatacgttgggggcttgatg 61569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 13150633 - 13150686
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| |  || |||||||||||||||||||||| || ||||||||||    
T  13150633 gagggcttgatgccatgtgagcctatttacgctcaatacgttgagggcttgatg 13150686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 14183721 - 14183774
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||| ||| ||| ||||||| |||||||| | |||||||||||||    
T  14183721 gagggcttgataccctgtgagtctatttatgctcaatatgttgggggcttgatg 14183774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 18075582 - 18075627
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggg 211  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||    
T  18075582 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggg 18075627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 18875946 - 18875999
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||||||||||||| |||||||| |||||| ||||||    
T  18875946 gagggcttgatgccctgtgagcctatttacggtcaatacgttgggggtttgatg 18875999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 20110389 - 20110336
Alignment:
Q  167 agggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    |||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  20110389 agggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 20110336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 36686297 - 36686350
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  36686297 gagggtttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 36686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 48811792 - 48811739
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  48811792 gagggtttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 48811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 1543476 - 1543508
Alignment:
Q  100 cataatacgagatgggagagagcttgatgctct 132  Q
    |||||||||||||||||||| ||||||||||||    
T  1543476 cataatacgagatgggagagggcttgatgctct 1543508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 20523 - 20691
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 113  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20523 agatgaaggatgatgttccaacttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 20622  T
Q  114 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctg 182  Q
    | ||||||||||||||||| ||||||||||||||||||||||| |||||| |||| | ||||| |||||    
T  20623 gtagagagcttgatgctctataatgtatatttatacataatacacgatggcagagaggttgatgctctg 20691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 20658 - 20780
Alignment:
Q  100 cataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctc 199  Q
    ||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  20658 cataatacacgatggcagagaggttgatgctctgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctaagagcctatttacgctc 20757  T
Q  200 aatacgatgggggcttgatgtcc 222  Q
    |||||||||||||||||||||||    
T  20758 aatacgatgggggcttgatgtcc 20780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 4647 - 4516
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4647 tgttaagatgttgagtccattgcatactcataatacgagatgggagagggcttgatgctctgtaatgtatatttatacataatacgagatgggagagggc 4548  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    || || ||||||||||||||||||||||||||    
T  4547 ttaatgctctgagagcctatttacgctcaata 4516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 8669 - 8800
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |||||||||| ||    
T  8669 tgttaggatgttgagtccattgcatactcataatacgagatgggggagggcttgatgctctgtaatgtatatttatacacaatatgagatgggagagagc 8768  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| ||||| ||||||||||||||||||||    
T  8769 ttgatgctctgggagcctatttacgctcaata 8800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 52250 - 52304
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  52250 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 52304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 9803 - 9701
Alignment:
Q  101 ataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctca 200  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  9803 ataatacgtgatgggagagggcttgatgctctgtaatgaatatttatacataatacgagatgggagagggcttgatgctctgagagcctatttacgctca 9704  T
Q  201 ata 203  Q
    |||    
T  9703 ata 9701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 9755 - 9722
Alignment:
Q  100 cataatacgagatgggagagagcttgatgctctg 133  Q
    |||||||||||||||||||| |||||||||||||    
T  9755 cataatacgagatgggagagggcttgatgctctg 9722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 43542902 - 43542758
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  43542902 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagagcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 43542806  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| || ||||||||||||||||||| |||||||||||||    
T  43542805 ttgatgctctgtgaccctatttacgctcaatacgttgggggcttgatg 43542758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 28194786 - 28194933
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||| ||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  28194786 tgtttagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 28194882  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  28194883 ttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 28194933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 41305924 - 41306068
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  41305924 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 41306020  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  41306021 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 41306068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 20636688 - 20636542
Alignment:
Q  73 gttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggct 172  Q
    ||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||| ||||||| | || |||||||||||    
T  20636688 gttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatccataatatgtgaagggagagggct 20636592  T
Q  173 tgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    |||| ||||| ||||||||||| |||||||||| ||||||||||||||||    
T  20636591 tgatgctctgtgagcctatttatgctcaatacgttgggggcttgatgtcc 20636542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 35982016 - 35982160
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||    
T  35982016 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtttatttatacataatatgtgaagggagagggc 35982112  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  35982113 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 35982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 43697110 - 43697015
Alignment:
Q  123 ttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgat 218  Q
    ||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||  ||| |||||||||||||||||| ||||||||||||    
T  43697110 ttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctatgagtctatttacgctcaatacgttgggggcttgat 43697015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 46382940 - 46383036
Alignment:
Q  123 ttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||| ||||||||||||| |||||| | |||||||||||||    
T  46382940 ttgatgctctgtaatgtatatttatacataatatgtgaagggagagggtttgatgctctgtgagcctatttacgttcaatatgttgggggcttgatg 46383036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 431594 - 431541
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  431594 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 431541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 35088430 - 35088379
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttga 217  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||    
T  35088430 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttga 35088379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 16368387 - 16368463
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccat 91  Q
    ||||||| ||||||||||||| |||||||||||  | ||||| ||||||||||||| ||| ||||  |||||||||||    
T  16368387 agatgaatgatgatgttccaaattattggatttata-taagaggtcgatgttctaagatgctaagttgttgagtccat 16368463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 41227790 - 41227843
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| |  || |||||||||||||||||||||| |||||||||||||    
T  41227790 gagggcttgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 41227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 50686631 - 50686555
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccat 91  Q
    ||||||| |||| |||||||| |||||||||||  || |||| ||||||||||||| ||||||||  |||||||||||    
T  50686631 agatgaaagatgttgttccaaattattggatttatat-aagaggtcgatgttctaagatgttaagttgttgagtccat 50686555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 20587684 - 20587632
Alignment:
Q  167 agggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  20587684 agggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 20587632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 20592222 - 20592170
Alignment:
Q  167 agggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  20592222 agggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 20592170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 35088534 - 35088503
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacata 152  Q
    ||||||||||||||||||||||||||||||||    
T  35088534 gcttgatgctctgtaatgtatatttatacata 35088503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 48300800 - 48300765
Alignment:
Q  184 gagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||||||||||||||| |||||||||||||    
T  48300800 gagcctatttacgctcaatacgttgggggcttgatg 48300765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 13528855 - 13528908
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||  |||||||||||||||||| |||||||||||||    
T  13528855 gagggcttgatgccctgtgattctatttacgctcaatacgttgggggcttgatg 13528908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 20316263 - 20316210
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| |  || |||||||||||||||||||||| |||||| ||||||    
T  20316263 gagggcttgatgccttgggagcctatttacgctcaatacgttgggggtttgatg 20316210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 20634671 - 20634720
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggctt 215  Q
    |||||||||||   ||| |||||||||||||||||||||| |||||||||    
T  20634671 gagggcttgatgtcctgtgagcctatttacgctcaatacgttgggggctt 20634720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 23967604 - 23967551
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||  |||| ||||||||    
T  23967604 gagggcttgatgccctgggagcctatttacgctcaataccttgggagcttgatg 23967551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 40389029 - 40388972
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatgtcc 222  Q
    ||||||||||| | ||| |||||||||||||||| | |||| ||||||||||||||||    
T  40389029 gagggcttgatgccctgggagcctatttacgctctactacgttgggggcttgatgtcc 40388972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 41050137 - 41050169
Alignment:
Q  14 agatgaaggatgatgttccaatttattggattt 46  Q
    ||||||||||||||||||||| |||||||||||    
T  41050137 agatgaaggatgatgttccaaattattggattt 41050169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 13311 - 13180
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || |||||||||||||||||  ||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||  | |||||||||||||    
T  13311 tgttaggatgttgagtccattgcatattcataatatgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 13212  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| ||||| ||||||||||||||||||||    
T  13211 ttgatgctctgggagcctatttacgctcaata 13180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 25012 - 24882
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || ||||||||||||||| |  ||||||  |||||||| ||  |||||||||||||||||||||||| ||||| |||  | |||||||||||||    
T  25012 tgttaggatgttgagtccattgcacattcataatctgagatgggggacggcttgatgctctgtaatgtatatt-atacacaatctgagatgggagagggc 24914  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| ||||| ||||||||||||||||||||    
T  24913 ttgatgctctgggagcctatttacgctcaata 24882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 34898 - 34767
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || |||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||  | |||||||||||||    
T  34898 tgttaggatgttgagtccattgcatattcataatacgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 34799  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    ||||| ||||| ||||||||||| ||||||||    
T  34798 ttgatgctctgggagcctatttatgctcaata 34767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 5889496 - 5889643
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | ||  |||||||||    
T  5889496 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaaaggagagggc 5889592  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  5889593 ttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 5889643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 21741873 - 21742025
Alignment:
Q  67 taaaatgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggag 166  Q
    |||| |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | ||  ||||    
T  21741873 taaattgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaaaggag 21741969  T
Q  167 agggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    |||| ||||| ||||| |||||||||||||||||||||| || |||||||||||||    
T  21741970 agggtttgatgctctgtgagcctatttacgctcaatacgttgagggcttgatgtcc 21742025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 29915436 - 29915500
Alignment:
Q  158 cgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatgtcc 222  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||| | | ||||||||||||||    
T  29915436 cgatgggcgagggcttgatgctctgtgagcctatttacgctcaataagttcggggcttgatgtcc 29915500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 21309063 - 21309116
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||| ||||||    
T  21309063 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggtttgatg 21309116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 19920652 - 19920617
Alignment:
Q  184 gagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||||||||||||||| |||||||||||||    
T  19920652 gagcctatttacgctcaatacgttgggggcttgatg 19920617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 14047957 - 14047903
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  14047957 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 14047903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 20918273 - 20918327
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  20918273 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 20918327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 32027229 - 32027175
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    |||||||| || | |||||||||||||||||||| |||||| |||||||||||||    
T  32027229 gagggcttaatgccctgagagcctatttacgctcaaatacgttgggggcttgatg 32027175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 44121 - 44265
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  44121 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 44217  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||    
T  44218 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 44265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 2792 - 2685
Alignment:
Q  112 tgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaatacgatgggg 211  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  2792 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatactctgtgagcctatttgcgctcaatacgttgggg 2693  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  2692 gcttgatg 2685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1792 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1792
Description:

Target: scaffold1792; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 179 - 36
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  179 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgag-gcttgacgctctgtaatgtatatttatacataatacgcgaagggagagggc 84  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||  |||||||||||||||||||| | || ||||||||||    
T  83 ttgatgctcttggagcctatttacgctcaatatgttgagggcttgatg 36  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 20790 - 20934
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||    
T  20790 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctataatgtatatttatacataatacgcaaagggagagggc 20886  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||  |||||||||||||||||||| | || ||||||||||    
T  20887 ttgatgctcttggagcctatttacgctcaatatgttgagggcttgatg 20934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 23721 - 23864
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||   |||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  23721 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgag-gcttgacgctctgtaatgtatatttatacataatacgcgaagggagagggc 23816  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||  |||||||||||||||||||| | || ||||||||||    
T  23817 ttgatgctcttggagcctatttacgctcaatatgttgagggcttgatg 23864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 74600 - 74469
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    ||||| || |||||||||||||||||  |||||||||||||||| ||| | |||||||||||||||||||||||||||| |||  | |||||||||||||    
T  74600 tgttaggatgttgagtccattgcatattcataatacgagatgggggagggtttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 74501  T
Q  172 ttgatactctgagagcctatttacgctcaata 203  Q
    |||||  |||| ||| ||||||| ||||||||    
T  74500 ttgatgttctgggagtctatttatgctcaata 74469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 106349 - 106205
Alignment:
Q  72 tgttaagaagttgagtccattgcatacgcataatacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggc 171  Q
    |||||||| |||||||||||||||||| |||  ||||  |  || ||||| ||||||||||||||||||||||||||||||||| | || ||||||| ||    
T  106349 tgttaagatgttgagtccattgcatactcatt-tacgtta--ggtgagagtttgatgctctgtaatgtatatttatacataatatgtgaagggagagagc 106253  T
Q  172 ttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||  |||||||||||||||||||| | |||||||||||||    
T  106252 ttgatgctctatgagcctatttacgctcaatatgttgggggcttgatg 106205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 47049 - 47140
Alignment:
Q  112 tgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatactctgagagcctatttacgctcaata 203  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||| ||||||||||||||||||||    
T  47049 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgatgggagagggcttgatgttctgtgagcctatttacgctcaata 47140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 57755 - 57702
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  57755 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 57702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 78041 - 77988
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  78041 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 77988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 78449 - 78502
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  78449 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 78502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 6786 - 6838
Alignment:
Q  167 agggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  6786 agggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 6838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 6701 - 6754
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| || ||||||||||||||||||| || ||||||||||    
T  6701 gagggcttgatgccctgtgaacctatttacgctcaatacgttgagggcttgatg 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 1899 - 1931
Alignment:
Q  14 agatgaaggatgatgttccaatttattggattt 46  Q
    ||||||||||||||||||||| |||||||||||    
T  1899 agatgaaggatgatgttccaaattattggattt 1931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 2936 - 2989
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||  |||||||||||||||||||||| |||||||||||||    
T  2936 gagggcttgatgccctatgagcctatttacgctcaatacgttgggggcttgatg 2989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 3025 - 3074
Alignment:
Q  170 gcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  3025 gcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 3074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 9399 - 9452
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  9399 gagggcttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 9452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 9441 - 9494
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | |||  ||||||||||||||||||||| |||||||||||||    
T  9441 gagggcttgatgccctgtaagcctatttacgctcaatacgttgggggcttgatg 9494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 2838 - 2785
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||| | |||||||||||||    
T  2838 gagggcttgatgccctgtgagcctatttacgctcaatatgttgggggcttgatg 2785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 698 - 751
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||||||||||| |||||||||| |||||||||||||    
T  698 gagggcttgatgccctgtgagcctatttatgctcaatacgttgggggcttgatg 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 41286 - 41339
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| |||||||||||||    
T  41286 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 41339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 7269 - 7216
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  7269 gagggcttgatgccctgtgagcctatttacgctcaatacgttgtgggcttgatg 7216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 14388 - 14335
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  14388 gagggcttgatgccctgtgagcctatttacgctcaatacgttgtgggcttgatg 14335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 14453 - 14400
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| ||||||||||||||| |||||| || ||||||||||    
T  14453 gagggcttgatgccctgtgagcctatttacgcttaatacgttgagggcttgatg 14400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 13638 - 13586
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgat 218  Q
    ||||||||||| | ||| |||||| ||||||||||||||| ||||||||||||    
T  13638 gagggcttgatgccctgtgagcctttttacgctcaatacgttgggggcttgat 13586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 60817 - 60880
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaag 78  Q
    ||||||| ||||||||||||| |||||||||||  | ||||| ||||||||||||| ||||||||    
T  60817 agatgaaagatgatgttccaaattattggatttata-taagaggtcgatgttctaagatgttaag 60880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 1433 - 1402
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacata 152  Q
    ||||||||||||||||||||||||||||||||    
T  1433 gcttgatgctctgtaatgtatatttatacata 1402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 9915 - 9950
Alignment:
Q  184 gagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||||||||||||||||| |||||||||||||    
T  9915 gagcctatttacgctcaatacgttgggggcttgatg 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 76768 - 76737
Alignment:
Q  121 gcttgatgctctgtaatgtatatttatacata 152  Q
    ||||||||||||||||||||||||||||||||    
T  76768 gcttgatgctctgtaatgtatatttatacata 76737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 10258 - 10292
Alignment:
Q  118 agagcttgatgctctgtaatgtatatttatacata 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  10258 agagcttgatgccctgtaatgtatatttatacata 10292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 15478 - 15532
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctc-aatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||| |||||| |||||||||||||    
T  15478 gagggcttgatgccctgggagcctatttacgctcaaatacgttgggggcttgatg 15532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1633 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 209 - 156
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||| ||||| | ||| |||||||||||||||||||||| || ||||||||||    
T  209 gagggtttgatgccctgtgagcctatttacgctcaatacgttgagggcttgatg 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1403 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1403
Description:

Target: scaffold1403; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 570 - 494
Alignment:
Q  14 agatgaaggatgatgttccaatttattggatttgcattaagaagtcgatgttctaaaatgttaagaagttgagtccat 91  Q
    |||||||  |||||||||||| |||||||||||  || |||| ||||||||||||| ||| ||||  |||||||||||    
T  570 agatgaattatgatgttccaaattattggatttatat-aagaggtcgatgttctaagatgctaagttgttgagtccat 494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 59650 - 59703
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    |||||||| || | ||| |||||||||||||||||||||| |||||| ||||||    
T  59650 gagggctttatgccctgtgagcctatttacgctcaatacgttgggggtttgatg 59703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 19516 - 19569
Alignment:
Q  166 gagggcttgatactctgagagcctatttacgctcaatacgatgggggcttgatg 219  Q
    ||||||||||| | ||| |||||||||||||||||||| | || ||||||||||    
T  19516 gagggcttgatgccctgtgagcctatttacgctcaatatgttgagggcttgatg 19569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University