View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6937_low_13 (Length: 211)

Name: NF6937_low_13
Description: NF6937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6937_low_13
NF6937_low_13
[»] chr2 (7 HSPs)
chr2 (10-72)||(24092997-24093059)
chr2 (73-127)||(29042336-29042390)
chr2 (71-127)||(29043618-29043674)
chr2 (145-194)||(29042401-29042450)
chr2 (72-125)||(30776465-30776519)
chr2 (157-198)||(29043556-29043597)
chr2 (72-116)||(25648620-25648664)
[»] chr1 (28 HSPs)
chr1 (71-125)||(9008759-9008813)
chr1 (145-198)||(35712520-35712573)
chr1 (76-127)||(43402266-43402317)
chr1 (73-123)||(48030240-48030290)
chr1 (145-194)||(35713633-35713682)
chr1 (73-124)||(17240717-17240769)
chr1 (73-124)||(51676338-51676389)
chr1 (73-124)||(21747943-21747995)
chr1 (72-124)||(42097325-42097378)
chr1 (73-124)||(17242105-17242157)
chr1 (73-124)||(35713697-35713749)
chr1 (73-116)||(42098740-42098784)
chr1 (73-124)||(43403299-43403351)
chr1 (73-124)||(9011061-9011111)
chr1 (74-121)||(30232739-30232786)
chr1 (76-127)||(31720542-31720593)
chr1 (74-125)||(49383023-49383074)
chr1 (73-123)||(24302936-24302985)
chr1 (146-191)||(13970018-13970062)
chr1 (73-124)||(13971004-13971056)
chr1 (73-124)||(21749290-21749341)
chr1 (163-198)||(30232683-30232718)
chr1 (72-106)||(24304326-24304360)
chr1 (76-126)||(37182076-37182126)
chr1 (145-191)||(43402327-43402373)
chr1 (145-191)||(48030177-48030223)
chr1 (146-196)||(51676272-51676322)
chr1 (96-124)||(35712472-35712500)
[»] chr8 (15 HSPs)
chr8 (73-127)||(14099745-14099799)
chr8 (73-124)||(38973753-38973804)
chr8 (73-124)||(39004851-39004902)
chr8 (73-124)||(9755684-9755736)
chr8 (73-124)||(42480898-42480949)
chr8 (156-198)||(26521935-26521977)
chr8 (73-127)||(38980157-38980211)
chr8 (73-127)||(39011254-39011308)
chr8 (73-124)||(3917796-3917847)
chr8 (71-119)||(34315168-34315215)
chr8 (145-191)||(38973819-38973864)
chr8 (145-191)||(39004917-39004962)
chr8 (73-126)||(40462270-40462324)
chr8 (73-124)||(14101091-14101143)
chr8 (90-122)||(40463610-40463642)
[»] chr4 (36 HSPs)
chr4 (74-124)||(56083355-56083405)
chr4 (71-124)||(47861931-47861984)
chr4 (73-126)||(12861412-12861465)
chr4 (72-124)||(23506385-23506438)
chr4 (73-124)||(1997060-1997112)
chr4 (73-124)||(16314203-16314255)
chr4 (73-127)||(20673565-20673620)
chr4 (73-120)||(44355419-44355466)
chr4 (145-191)||(1996998-1997044)
chr4 (72-124)||(5169312-5169365)
chr4 (72-124)||(17288630-17288683)
chr4 (73-124)||(1995868-1995920)
chr4 (73-124)||(2751518-2751570)
chr4 (146-198)||(12862647-12862699)
chr4 (73-124)||(23504895-23504947)
chr4 (73-124)||(39661319-39661371)
chr4 (145-192)||(1995935-1995982)
chr4 (72-122)||(2753069-2753120)
chr4 (73-127)||(43742021-43742076)
chr4 (72-124)||(5170387-5170440)
chr4 (90-123)||(47376551-47376584)
chr4 (76-116)||(6212507-6212547)
chr4 (73-116)||(17288766-17288810)
chr4 (73-124)||(24685024-24685076)
chr4 (73-124)||(44353876-44353928)
chr4 (145-184)||(5169380-5169419)
chr4 (148-191)||(5170326-5170368)
chr4 (145-192)||(16314141-16314188)
chr4 (145-180)||(56083421-56083456)
chr4 (145-198)||(6658689-6658742)
chr4 (73-126)||(6658754-6658807)
chr4 (73-105)||(11429440-11429472)
chr4 (73-124)||(12862716-12862768)
chr4 (73-124)||(16312647-16312699)
chr4 (73-125)||(24127586-24127638)
chr4 (87-127)||(39660385-39660424)
[»] chr7 (24 HSPs)
chr7 (71-124)||(5769308-5769362)
chr7 (73-125)||(6591269-6591321)
chr7 (73-124)||(21261980-21262032)
chr7 (73-124)||(19628184-19628235)
chr7 (145-191)||(21262048-21262094)
chr7 (145-198)||(7849192-7849244)
chr7 (72-124)||(47578587-47578640)
chr7 (73-124)||(5737177-5737229)
chr7 (73-124)||(12628033-12628085)
chr7 (73-124)||(21263321-21263373)
chr7 (73-124)||(23525581-23525633)
chr7 (73-127)||(7848006-7848061)
chr7 (145-192)||(21263259-21263306)
chr7 (145-196)||(23526703-23526754)
chr7 (85-127)||(15814446-15814488)
chr7 (73-124)||(12629431-12629483)
chr7 (162-192)||(23525672-23525702)
chr7 (73-126)||(91938-91991)
chr7 (149-194)||(7848075-7848120)
chr7 (145-186)||(19628126-19628167)
chr7 (73-125)||(23456680-23456733)
chr7 (145-194)||(47573157-47573206)
chr7 (72-100)||(41097762-41097790)
chr7 (145-181)||(47578533-47578569)
[»] chr5 (8 HSPs)
chr5 (145-194)||(27490168-27490217)
chr5 (73-124)||(12316348-12316399)
chr5 (145-196)||(27491211-27491262)
chr5 (73-123)||(27491278-27491328)
chr5 (73-125)||(27490099-27490152)
chr5 (73-124)||(29875947-29875998)
chr5 (72-126)||(6377029-6377083)
chr5 (73-116)||(7491812-7491855)
[»] chr6 (20 HSPs)
chr6 (73-124)||(12603937-12603988)
chr6 (75-124)||(26545871-26545920)
chr6 (73-124)||(21383822-21383874)
chr6 (73-124)||(32146094-32146146)
chr6 (73-124)||(25483402-25483453)
chr6 (145-191)||(21383761-21383807)
chr6 (146-192)||(26545807-26545853)
chr6 (73-125)||(6624253-6624304)
chr6 (73-124)||(21382482-21382534)
chr6 (145-192)||(21382549-21382596)
chr6 (146-180)||(7538329-7538363)
chr6 (146-191)||(32145123-32145167)
chr6 (73-125)||(21511492-21511544)
chr6 (73-124)||(25482148-25482200)
chr6 (73-127)||(9307139-9307194)
chr6 (72-127)||(12605244-12605299)
chr6 (145-184)||(26544411-26544450)
chr6 (73-122)||(5858898-5858948)
chr6 (145-195)||(6624325-6624374)
chr6 (73-124)||(35223132-35223184)
[»] scaffold0484 (2 HSPs)
scaffold0484 (73-127)||(11536-11590)
scaffold0484 (73-127)||(12797-12851)
[»] chr3 (34 HSPs)
chr3 (73-127)||(48537852-48537905)
chr3 (73-124)||(36438775-36438827)
chr3 (74-125)||(42277232-42277283)
chr3 (73-123)||(13865958-13866007)
chr3 (145-191)||(39605646-39605692)
chr3 (73-124)||(15438470-15438522)
chr3 (73-124)||(15439681-15439733)
chr3 (73-124)||(34799865-34799917)
chr3 (73-124)||(42278457-42278509)
chr3 (145-192)||(34799932-34799979)
chr3 (145-192)||(34801331-34801378)
chr3 (76-127)||(46651699-46651749)
chr3 (156-198)||(34825663-34825705)
chr3 (73-125)||(9239132-9239185)
chr3 (71-124)||(25338910-25338963)
chr3 (74-123)||(39605584-39605632)
chr3 (73-124)||(36437214-36437266)
chr3 (73-124)||(37085413-37085465)
chr3 (73-124)||(37086743-37086795)
chr3 (146-189)||(9239077-9239119)
chr3 (145-192)||(37085479-37085526)
chr3 (145-192)||(37086681-37086728)
chr3 (145-184)||(39606584-39606623)
chr3 (73-124)||(48165506-48165557)
chr3 (73-116)||(52042115-52042158)
chr3 (74-123)||(11151596-11151646)
chr3 (145-195)||(13865894-13865943)
chr3 (90-124)||(34801393-34801427)
chr3 (145-191)||(52092839-52092885)
chr3 (74-127)||(14997027-14997079)
chr3 (71-100)||(23903272-23903301)
chr3 (73-124)||(11150271-11150323)
chr3 (72-100)||(11494613-11494641)
chr3 (72-124)||(13865043-13865095)
[»] scaffold0049 (2 HSPs)
scaffold0049 (73-125)||(3924-3976)
scaffold0049 (72-121)||(385-435)
[»] scaffold0262 (1 HSPs)
scaffold0262 (73-127)||(4379-4434)
[»] scaffold0408 (1 HSPs)
scaffold0408 (73-123)||(10087-10136)
[»] scaffold0071 (2 HSPs)
scaffold0071 (73-124)||(22458-22510)
scaffold0071 (73-124)||(23669-23721)
[»] scaffold0197 (1 HSPs)
scaffold0197 (73-114)||(28783-28824)
[»] scaffold0471 (1 HSPs)
scaffold0471 (73-125)||(12192-12244)
[»] scaffold0061 (1 HSPs)
scaffold0061 (73-116)||(11264-11308)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 24093059 - 24092997
Alignment:
Q  10 cgaataatatgatgtgataaaactaaagtgattaaaatattcatgtctccataattgtaacat 72  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24093059 cgaataatatgatgtgataaaactaaagtgattaaaatactcatgtctccataattgtaacat 24092997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 29042336 - 29042390
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  29042336 gggttaataggcttttaccccctgctatttgggggtcttttggtatacctcctat 29042390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 29043674 - 29043618
Alignment:
Q  71 atgggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  29043674 atgggttaataggcttttatcccgtgccatttaggggtcttttggtgtaccccctat 29043618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 29042401 - 29042450
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctga 194  Q
    |||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  29042401 cttggagattcccccttgaaaaatgaagattctttggtttacacacctga 29042450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 30776465 - 30776519
Alignment:
Q  72 tgggttaataggctttta-ccccctgccatttgggggtcttttggtataccccct 125  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| |||||||    
T  30776465 tgggttaataggcttttacccccctaccatttggaggacttttggtagaccccct 30776519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 29043597 - 29043556
Alignment:
Q  157 ccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    |||| |||||||||||||| |||||||||||||| |||||||    
T  29043597 cccttgtaaaatgaagattatttggtttacacccttgatgtc 29043556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 25648620 - 25648664
Alignment:
Q  72 tgggttaataggcttttaccccctgccatttgggggtcttttggt 116  Q
    ||||||||||||||||||| ||||||||||| || | ||||||||    
T  25648620 tgggttaataggcttttactccctgccatttaggagacttttggt 25648664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 9008759 - 9008813
Alignment:
Q  71 atgggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008759 atgggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 9008813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 35712520 - 35712573
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35712520 cttggagattcccccttgtaaaatgaagattctttggtttacacccctgatgtc 35712573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 43402266 - 43402317
Alignment:
Q  76 ttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43402266 ttaataggcttttaccccctgccatttgggggtcttttggtttaccccctat 43402317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 48030290 - 48030240
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccc 123  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48030290 gggttaataggcttttaccccctgccatttgggggtcttttgatatacccc 48030240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 35713682 - 35713633
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctga 194  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35713682 cttggagattcccccttgtaaaatgaagattctttggtttacacccctga 35713633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 17240717 - 17240769
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17240717 gggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 17240769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 51676389 - 51676338
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  51676389 gggttaatagacttttaccccctgctatttgggggtcttttggtataccccc 51676338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 21747943 - 21747995
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  21747943 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 21747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 42097325 - 42097378
Alignment:
Q  72 tgggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  42097325 tgggttaataggtttttacccccctgccatttgggggtcttttggtttaccccc 42097378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 17242157 - 17242105
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  17242157 gggttaataggcttttacccccctgccatttgggggctttttggtataccccc 17242105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 35713749 - 35713697
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  35713749 gggttaatgggcttttacccccctgccatatgggggtcttttggtataccccc 35713697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 42098784 - 42098740
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggt 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  42098784 gggttaataggcttttacccccctgccatttgggggtcttttggt 42098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 43403351 - 43403299
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  43403351 gggttaataggcttttatccccctgtcatttgggggtcttttggtttaccccc 43403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 9011111 - 9011061
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  9011111 gggttaataggtttttaccccctgccatttggggct-ttttggtataccccc 9011061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 30232786 - 30232739
Alignment:
Q  74 ggttaataggcttttaccccctgccatttgggggtcttttggtatacc 121  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  30232786 ggttaataggcttttaccccctgctatttgagggtcttttgatatacc 30232739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 31720542 - 31720593
Alignment:
Q  76 ttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||| |||||| |||| | ||||||||||||||||||||||||||||||    
T  31720542 ttaatagacttttatcccccgtcatttgggggtcttttggtataccccctat 31720593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 49383023 - 49383074
Alignment:
Q  74 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  49383023 ggttaatagacttttaccccctgccatttaggggacttttggtttaccccct 49383074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 24302936 - 24302985
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccc 123  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  24302936 gggttaataggattttaccccctgccattt-ggggtcttttggtttacccc 24302985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 13970018 - 13970062
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  13970018 ttggagattccccct-gtaaaatgaagattctttggtttatacccc 13970062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 13971056 - 13971004
Alignment:
Q  73 gggttaataggcttttac-cccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||| |||||||    
T  13971056 gggttaataggtttttactcccctgccatttgggagtcttttggtttaccccc 13971004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 21749341 - 21749290
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||| |||| || | |||||||||| |||||||    
T  21749341 gggttaataggcttttaccccctaccatatgtgcgtcttttggtttaccccc 21749290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 30232718 - 30232683
Alignment:
Q  163 taaaatgaagattctttggtttacacccctgatgtc 198  Q
    |||||||||||||||||||||||||||| |||||||    
T  30232718 taaaatgaagattctttggtttacacccttgatgtc 30232683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 24304360 - 24304326
Alignment:
Q  72 tgggttaataggcttttaccccctgccatttgggg 106  Q
    |||||||||||| ||||||||||||||||||||||    
T  24304360 tgggttaataggtttttaccccctgccatttgggg 24304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 37182076 - 37182126
Alignment:
Q  76 ttaataggcttttaccccctgccatttgggggtcttttggtatacccccta 126  Q
    |||||||||||||||||||||| || |||| |||||||||  |||||||||    
T  37182076 ttaataggcttttaccccctgctatatgggcgtcttttggcttacccccta 37182126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 43402327 - 43402373
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||||||   ||||||| ||||||||||||||||||||||    
T  43402327 cttggagattcccctatgtaaaataaagattctttggtttacacccc 43402373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 48030223 - 48030177
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||||||    
T  48030223 cttggagattctcccttataaaatgtagattctttggtttacacccc 48030177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 51676322 - 51676272
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttggtttacacccctgatg 196  Q
    ||||||| ||||||| ||||||||||||||||||| ||| || ||||||||    
T  51676322 ttggagaatcccccttgtaaaatgaagattctttgattttcaaccctgatg 51676272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 35712472 - 35712500
Alignment:
Q  96 gccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||||||||||    
T  35712472 gccatttgggggtcttttggtataccccc 35712500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 14099745 - 14099799
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14099745 gggttaataggcttttaccccctgccatttgggggtcttttggtttaccccctat 14099799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 38973753 - 38973804
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  38973753 gggttaataggtttttaccccctgccatttgggggttttttggtataccccc 38973804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 39004851 - 39004902
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  39004851 gggttaataggtttttaccccctgccatttgggggttttttggtataccccc 39004902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 9755684 - 9755736
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  9755684 gggttaatagacttttacccccctgccatttgggggtcttttggtataccccc 9755736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 42480898 - 42480949
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  42480898 gggttaataggcttttaccccctgccatttaggggttttttggtttaccccc 42480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 26521977 - 26521935
Alignment:
Q  156 cccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  26521977 ccccttgtaaaatgaagattctttggtttacacccctgatgtc 26521935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 38980211 - 38980157
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||| |||||||||||| |||||||| |||||||||| ||||||||||    
T  38980211 gggttaataggtttttaccccctgtcatttgggagtcttttggtttaccccctat 38980157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 39011308 - 39011254
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||| |||||||||||| |||||||| |||||||||| ||||||||||    
T  39011308 gggttaataggtttttaccccctgtcatttgggagtcttttggtttaccccctat 39011254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 3917796 - 3917847
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||||||||||||| | | |||||| |||||||    
T  3917796 gggttaataggcttttaccccctgccatttgggcgacatttggtttaccccc 3917847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 34315215 - 34315168
Alignment:
Q  71 atgggttaataggcttttaccccctgccatttgggggtcttttggtata 119  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  34315215 atgggttaatagacttttacccc-tgctatttgggggtcttttggtata 34315168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 38973819 - 38973864
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||    
T  38973819 cttggagattctcccg-gtaaaatgaagattctttggtttacacccc 38973864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 39004917 - 39004962
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||    
T  39004917 cttggagattctcccg-gtaaaatgaagattctttggtttacacccc 39004962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 40462270 - 40462324
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtatacccccta 126  Q
    ||||||||||||||||| ||||||||||| |||| | |||||||| |||||||||    
T  40462270 gggttaataggcttttacccccctgccatatgggtgacttttggtttacccccta 40462324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 14101143 - 14101091
Alignment:
Q  73 gggttaataggcttttac-cccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||| |||||||||| || | |||||||||| |||||||    
T  14101143 gggttaataggcttttacccccctgccatatgagcgtcttttggtttaccccc 14101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 40463642 - 40463610
Alignment:
Q  90 ccccctgccatttgggggtcttttggtataccc 122  Q
    ||||||||||||||||||||||||||| |||||    
T  40463642 ccccctgccatttgggggtcttttggtttaccc 40463610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 56083355 - 56083405
Alignment:
Q  74 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56083355 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 56083405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 47861931 - 47861984
Alignment:
Q  71 atgggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47861931 atggattaataggcttttaccccctgccatttgggggtcttttggtttaccccc 47861984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 12861412 - 12861465
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccccta 126  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  12861412 gggttaataggcttttaccccctgctatttgggggtgttttggtttacccccta 12861465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 23506438 - 23506385
Alignment:
Q  72 tgggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  23506438 tgggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 23506385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 1997112 - 1997060
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  1997112 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 1997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 16314255 - 16314203
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16314255 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 16314203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 20673565 - 20673620
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  20673565 gggttaataggcttttacccccctgccatttgggtgtcttttggtttaccccctat 20673620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 44355466 - 44355419
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatac 120  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  44355466 gggttaataggtttttaccccctgccatttggaggtcttttggtatac 44355419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 1997044 - 1996998
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  1997044 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 1996998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 5169312 - 5169365
Alignment:
Q  72 tgggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  5169312 tgggttaataggcttttacccccctgccatttgggcgtcttttggtttaccccc 5169365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 17288630 - 17288683
Alignment:
Q  72 tgggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  17288630 tgggttaataggcttttacccccctgccatttgggggacttttggtttaccccc 17288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 1995868 - 1995920
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  1995868 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 1995920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 2751518 - 2751570
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  2751518 gggttaataagcttttatccccctgccatttgggggacttttggtataccccc 2751570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 12862699 - 12862647
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    ||||||||||||||| ||||||||||||||||||| ||| || ||||||||||    
T  12862699 ttggagattcccccttgtaaaatgaagattctttgattttcaaccctgatgtc 12862647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 23504895 - 23504947
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  23504895 gggttaataggcttttacccccctgccatttgggggtctttttgtttaccccc 23504947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 39661371 - 39661319
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  39661371 gggttaataggtttttaaccccctgccatttgggggtcttttggtttaccccc 39661319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 1995935 - 1995982
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||||    
T  1995935 cttggagattcccccttgtaaaatgtagattctttggtttacccccct 1995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 2753120 - 2753069
Alignment:
Q  72 tgggttaataggcttttaccccc-tgccatttgggggtcttttggtataccc 122  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  2753120 tgggttaataggcttttacccccctgccatttgggggacttttggtagaccc 2753069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 43742076 - 43742021
Alignment:
Q  73 gggttaataggcttttac-cccctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||    
T  43742076 gggttaatagacttttacacccctgctatttgggggtcttttggtttaccccctat 43742021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 5170440 - 5170387
Alignment:
Q  72 tgggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||| |||||||| || || |||||||||||||||    
T  5170440 tgggttaataggcttttacccccctgccattttggagttttttggtataccccc 5170387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 47376551 - 47376584
Alignment:
Q  90 ccccctgccatttgggggtcttttggtatacccc 123  Q
    ||||||||||||||||||||||||||||||||||    
T  47376551 ccccctgccatttgggggtcttttggtatacccc 47376584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 6212547 - 6212507
Alignment:
Q  76 ttaataggcttttaccccctgccatttgggggtcttttggt 116  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  6212547 ttaataggtttttaccccctgtcatttgggggtcttttggt 6212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 17288810 - 17288766
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggt 116  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  17288810 gggttaataggcttttacccccctgccatttgggggacttttggt 17288766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 24685024 - 24685076
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| ||||||| |||| || |||||||||||||||    
T  24685024 gggttaataggcttttacccccctgccatatgggcgtattttggtataccccc 24685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 44353876 - 44353928
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||| || |||||||||| |||||||||||||| ||||||||||||||||    
T  44353876 gggttaacagacttttacccccctgccatttgggggacttttggtataccccc 44353928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 5169380 - 5169419
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggttt 184  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  5169380 cttggagattcccccttgcaaaatgaagattctttggttt 5169419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 5170368 - 5170326
Alignment:
Q  148 ggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  5170368 ggagattccccct-gtaaaatgaagattctttggtttacgcccc 5170326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 16314188 - 16314141
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||| ||||||| |||||||||||||| || |||||    
T  16314188 cttggagattcccccttgtaaaataaagattctttggttcacccccct 16314141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 56083421 - 56083456
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttg 180  Q
    |||||||||||||||| |||||||||||||||||||    
T  56083421 cttggagattcccccttgtaaaatgaagattctttg 56083456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 6658742 - 6658689
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    |||||||||||||| | ||||||||||||||||||| ||| || ||| ||||||    
T  6658742 cttggagattcccctttgtaaaatgaagattctttgattttcaacccggatgtc 6658689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 6658807 - 6658754
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccccta 126  Q
    ||||||||||   |||||||||||||||||| |||| ||||||| |||||||||    
T  6658807 gggttaatagatgtttaccccctgccatttgagggtattttggtttacccccta 6658754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 11429472 - 11429440
Alignment:
Q  73 gggttaataggcttttaccccctgccatttggg 105  Q
    |||||||||| ||||||||||||||||||||||    
T  11429472 gggttaatagacttttaccccctgccatttggg 11429440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 12862768 - 12862716
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||| ||||||||| ||||||||| |||| ||||||| |||||||    
T  12862768 gggttaataggcgtttacccccctgccatttgagggtattttggtttaccccc 12862716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 16312647 - 16312699
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| || ||||||| ||||||||||||||| ||||||| |||||||    
T  16312647 gggttaatagcctcttacccccctgccatttgggggttttttggtttaccccc 16312699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 24127638 - 24127586
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||| ||||||||||||||||||||  |||  ||||||| ||||||||    
T  24127638 gggttaataagcttttaccccctgccatttaagggatttttggtttaccccct 24127586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 39660385 - 39660424
Alignment:
Q  87 ttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  39660385 ttaccccctgccattt-ggggtcttttggtttaccccctat 39660424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 5769362 - 5769308
Alignment:
Q  71 atgggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5769362 atgggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 5769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 6591269 - 6591321
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  6591269 gggttaataggcttttaccccctgccatttggtggtattttggtatactccct 6591321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 21261980 - 21262032
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  21261980 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 21262032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 19628235 - 19628184
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  19628235 gggttaataggtttttaccccctgccatttgggagtcttttggtttaccccc 19628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 21262048 - 21262094
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  21262048 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 21262094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 7849244 - 7849192
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  7849244 cttggagattcccctt-gtaaaatgaagattctttggtttacatccctgatgtc 7849192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 47578640 - 47578587
Alignment:
Q  72 tgggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  47578640 tgggttaataggcttttacccccctgccatttgggagacttttggtataccccc 47578587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 5737177 - 5737229
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  5737177 gggttaataggcttttacccccctgccatttgggggctttttggtataccccc 5737229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 12628033 - 12628085
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  12628033 gggttaataggcttttacccccctgccatttgcgggtcttttggtttaccccc 12628085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 21263373 - 21263321
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  21263373 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 21263321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 23525581 - 23525633
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  23525581 gggttaataggcttttaccccgctgccatttgggggatttttggtataccccc 23525633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 7848006 - 7848061
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||| |||||||||||| ||||||| || |||||||||||||||||||||||    
T  7848006 gggttaatgggcttttacccccctgccatatgagggtcttttggtataccccctat 7848061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 21263306 - 21263259
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||||    
T  21263306 cttggagattcccccttgtaaaatgtagattctttggtttacccccct 21263259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 23526754 - 23526703
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgatg 196  Q
    |||||||||||||||   |||||||||||||||||||||||||||| |||||    
T  23526754 cttggagattcccccctataaaatgaagattctttggtttacacccatgatg 23526703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 15814446 - 15814488
Alignment:
Q  85 ttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  15814446 ttttaccccctgccatatgggcgtcttttggtataccccctat 15814488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 12629483 - 12629431
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| ||||||||  |||||||||||| |||||||    
T  12629483 gggttaataggcttttacccccctgccatttacgggtcttttggtttaccccc 12629431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 23525672 - 23525702
Alignment:
Q  162 gtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||||||||||||||||||    
T  23525672 gtaaaatgaagattctttggtttacacccct 23525702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 91938 - 91991
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccccta 126  Q
    |||||||  ||||||||||||||| ||| |||| |||||||||| |||||||||    
T  91938 gggttaactggcttttaccccctgtcatatgggcgtcttttggtttacccccta 91991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 7848075 - 7848120
Alignment:
Q  149 gagattccccctcgtaaaatgaagattctttggtttacacccctga 194  Q
    |||||||||||| |||||||||||||||| ||| | ||||||||||    
T  7848075 gagattcccccttgtaaaatgaagattctctggctaacacccctga 7848120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 19628167 - 19628126
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttac 186  Q
    |||||||||||||||| ||||||| |||||| ||||||||||    
T  19628167 cttggagattcccccttgtaaaataaagattatttggtttac 19628126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 23456733 - 23456680
Alignment:
Q  73 gggttaataggcttttac-cccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||||| |||||| |||||||||| || | |||||||||||||||||||    
T  23456733 gggttaataggtttttactcccctgccatatgagcgtcttttggtataccccct 23456680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 47573157 - 47573206
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctga 194  Q
    |||||||||||  ||| |||||||||||||| |||||||| |||||||||    
T  47573157 cttggagattcttccttgtaaaatgaagattttttggtttgcacccctga 47573206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 41097790 - 41097762
Alignment:
Q  72 tgggttaataggcttttaccccctgccat 100  Q
    |||||||||||||||||||||||||||||    
T  41097790 tgggttaataggcttttaccccctgccat 41097762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 47578569 - 47578533
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttgg 181  Q
    ||||||||||||||||  |||||||||||||||||||    
T  47578569 cttggagattcccccttttaaaatgaagattctttgg 47578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 27490168 - 27490217
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctga 194  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27490168 cttggagattcccccttgtaaaatgaagattctttggtttacacccctga 27490217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 12316348 - 12316399
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  12316348 gggttaataggcttttactccctgccatttggaggtcttttggtataccccc 12316399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 27491262 - 27491211
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgatg 196  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27491262 cttggagattccccattgtaaaatgaagattctttggtttacacccctgatg 27491211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 27491328 - 27491278
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccc 123  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  27491328 gggttaataggcttttaccccctgcaatttgggggacttttggtacacccc 27491278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 27490099 - 27490152
Alignment:
Q  73 gggttaataggcttttacc-ccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  27490099 gggttaataggcttttacctccctgtcatatgggggtcttttggtataccccct 27490152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 29875947 - 29875998
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||||||||||||| | | |||||| |||||||    
T  29875947 gggttaataggcttttaccccctgccatttgggcgacatttggtttaccccc 29875998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 6377083 - 6377029
Alignment:
Q  72 tgggttaataggcttttaccccctgccatttgggggtcttttggtatacccccta 126  Q
    ||||||||||| ||||||||||||| ||||||| ||| ||||||| |||||||||    
T  6377083 tgggttaatagacttttaccccctgtcatttggaggtattttggtttacccccta 6377029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 7491812 - 7491855
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggt 116  Q
    |||||||||| ||||||||||||||||||||  |||||||||||    
T  7491812 gggttaatagacttttaccccctgccatttgaaggtcttttggt 7491855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 12603937 - 12603988
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  12603937 gggttaataggcttttaccccctgccatttgggagtcttttggtttaccccc 12603988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 26545920 - 26545871
Alignment:
Q  75 gttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  26545920 gttaataggcttttaccccctgccatttgagggtcttttggtttaccccc 26545871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 21383874 - 21383822
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  21383874 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 21383822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 32146146 - 32146094
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  32146146 gggttaataggcttttatccccctgccatttgggggtcttttggtttaccccc 32146094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 25483453 - 25483402
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  25483453 gggttaataggcttttaccccctgccatttgggagtcttttggattaccccc 25483402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 21383807 - 21383761
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  21383807 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 21383761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 26545853 - 26545807
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccct 26545807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 6624253 - 6624304
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  6624253 gggttaataggtttttaccccttgccattt-ggggtcttttggtataccccct 6624304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 21382482 - 21382534
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  21382482 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 21382534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 21382549 - 21382596
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||||    
T  21382549 cttggagattcccccttgtaaaatgtagattctttggtttacccccct 21382596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 7538329 - 7538363
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttg 180  Q
    |||||||||||||||||||||||||||||||||||    
T  7538329 ttggagattccccctcgtaaaatgaagattctttg 7538363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 32145123 - 32145167
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32145123 ttggagattccccct-gtaaaataaagattctttggtttacacccc 32145167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 21511492 - 21511544
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||| | |||||||||| ||||||||||| ||||||||| ||||||||    
T  21511492 gggttaataaggttttacccccggccatttggggatcttttggtttaccccct 21511544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 25482148 - 25482200
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| ||||||||| || |||||||||| |||||||    
T  25482148 gggttaataggcttttacccccctgccatttaggagtcttttggtttaccccc 25482200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 9307194 - 9307139
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||| |||||||||| |||||| |||| || ||||||||||||||||||    
T  9307194 gggttaataggtttttacccccctgccatatgggcgtattttggtataccccctat 9307139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 12605299 - 12605244
Alignment:
Q  72 tgggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||| |||||| ||||||||||||  | |||||||||| ||||||||||    
T  12605299 tgggttaatagacttttatcccctgccatttatgagtcttttggtttaccccctat 12605244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 26544411 - 26544450
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggttt 184  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  26544411 cttggagattcccccttgtaaaataaagattctttggttt 26544450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 5858898 - 5858948
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccc 122  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||| |||||    
T  5858898 gggttaatagacttttacccccctgccatttgggggttttttggtttaccc 5858948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 6624325 - 6624374
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgat 195  Q
    |||||||||||||||| ||||||| ||||||||||||||| || |||||||    
T  6624325 cttggagattccccct-gtaaaataaagattctttggtttccaaccctgat 6624374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 35223132 - 35223184
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| |||||||||| ||||||||||| ||| ||||||| |||||||    
T  35223132 gggttaatagacttttacccccctgccatttggcggtgttttggtttaccccc 35223184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 11536 - 11590
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  11536 gggttaataggcttttaccccctgccatttgggagtcttttggattaccccctat 11590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 12851 - 12797
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||||||||||||||| | ||||||| || |||||||||| ||||||||||    
T  12851 gggttaataggcttttaccctccgccatttaggagtcttttggtttaccccctat 12797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 48537852 - 48537905
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48537852 gggttaataggcttttacccc-tgccatttgggggtcttttggtttaccccctat 48537905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 36438827 - 36438775
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  36438827 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 36438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 42277232 - 42277283
Alignment:
Q  74 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  42277232 ggttaataggcttttaccccctgccatttgggttttttttggtataccccct 42277283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 13866007 - 13865958
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccc 123  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  13866007 gggttaataggcttttacccc-taccatttgggggtcttttggtatacccc 13865958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 39605646 - 39605692
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||    
T  39605646 cttggagattcccccctgtaaaatgaagattctttggtttacacccc 39605692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 15438470 - 15438522
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  15438470 gggttaataggcttttacccccctgccatttgagggttttttggtataccccc 15438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 15439733 - 15439681
Alignment:
Q  73 gggttaataggcttttaccccct-gccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  15439733 gggttaataggcttttacccccccgccatttgggggtcttttggtttaccccc 15439681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 34799865 - 34799917
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  34799865 gggttaatagacttttacccccctgccatttgggggtcttttggtttaccccc 34799917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 42278509 - 42278457
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  42278509 gggttaataggcttttacccccctaccatttgggggtcttttggtttaccccc 42278457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 34799932 - 34799979
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||||    
T  34799932 cttggagattcccccttgcaaaatgaagattctttggtttacccccct 34799979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 34801378 - 34801331
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  34801378 cttggagattcccccttgtaaaataaagattctttggtttacccccct 34801331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 46651699 - 46651749
Alignment:
Q  76 ttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  46651699 ttaatgggcttttaccccctgccatatgggg-tcttttggtataccccctat 46651749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 34825663 - 34825705
Alignment:
Q  156 cccctcgtaaaatgaagattctttggtttacacccctgatgtc 198  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  34825663 ccccttgtaaaatgaaaattctttggtttacacccctgatgtc 34825705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 9239185 - 9239132
Alignment:
Q  73 gggttaataggcttttaccc-cctgccatttgggggtcttttggtataccccct 125  Q
    |||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||    
T  9239185 gggttaatagacttttaccctcctgccatttgggggacttttgggataccccct 9239132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 25338910 - 25338963
Alignment:
Q  71 atgggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||||||| |||||||    
T  25338910 atgggttaatagacttttaccctctgccatttggtggttttttggtttaccccc 25338963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 39605584 - 39605632
Alignment:
Q  74 ggttaataggcttttaccccctgccatttgggggtcttttggtatacccc 123  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  39605584 ggttaataggcttttacccc-tgccatttgggggttttttggtgtacccc 39605632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 36437214 - 36437266
Alignment:
Q  73 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||| |||||||    
T  36437214 gggttaatagccttttacccccctgccatttgggggttttttggtttaccccc 36437266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 37085413 - 37085465
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||| |||||||    
T  37085413 gggttaataggtttttatccccctgccatttgggcgtcttttggtttaccccc 37085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 37086795 - 37086743
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| ||||||||| | |||||||||| |||||||    
T  37086795 gggttaataggcttttacccccctgccatttgagcgtcttttggtttaccccc 37086743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 9239119 - 9239077
Alignment:
Q  146 ttggagattccccctcgtaaaatgaagattctttggtttacacc 189  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  9239119 ttggagattccccct-gtaaaatgaagattatttggtttacacc 9239077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 37085479 - 37085526
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||    
T  37085479 cttggagattcccccctgtaaaataaagattctttggtttacccccct 37085526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 37086728 - 37086681
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccct 192  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||    
T  37086728 cttggagattcccccctgtaaaataaagattctttggtttacccccct 37086681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 39606623 - 39606584
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggttt 184  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  39606623 cttggagattcccccttgcaaaatgaagattctttggttt 39606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 48165506 - 48165557
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||| |||||||  |||||||||||| ||||||||||| |||||||    
T  48165506 gggttaatagacttttacttcctgccatttggaggtcttttggtttaccccc 48165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 52042115 - 52042158
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggt 116  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||    
T  52042115 gggttaataggcttttaccccctgtcatatgggtgtcttttggt 52042158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 11151646 - 11151596
Alignment:
Q  74 ggttaataggcttttaccccc-tgccatttgggggtcttttggtatacccc 123  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| ||||||    
T  11151646 ggttaataggcttttacccccctaccatttgggggacttttggtttacccc 11151596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 13865943 - 13865894
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccctgat 195  Q
    ||||||||||||||||  |||||||||||||||||||||| || |||||||    
T  13865943 cttggagattcccccta-taaaatgaagattctttggttttcaaccctgat 13865894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 34801427 - 34801393
Alignment:
Q  90 ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||||||| |||||||    
T  34801427 ccccctgccatttgggggtcttttggtttaccccc 34801393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 52092885 - 52092839
Alignment:
Q  145 cttggagattccccctcgtaaaatgaagattctttggtttacacccc 191  Q
    |||||||||||| ||| ||||||| ||||||||||| ||||||||||    
T  52092885 cttggagattcctccttgtaaaataaagattctttgatttacacccc 52092839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 14997027 - 14997079
Alignment:
Q  74 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccctat 127  Q
    |||||||||||||||||||| ||||||||||  |||||||||| || |||||||    
T  14997027 ggttaataggcttttacccc-tgccatttggaagtcttttggtttatcccctat 14997079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 23903272 - 23903301
Alignment:
Q  71 atgggttaataggcttttaccccctgccat 100  Q
    ||||||||||||||||||||||||||||||    
T  23903272 atgggttaataggcttttaccccctgccat 23903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 11150271 - 11150323
Alignment:
Q  73 gggttaataggctttta-ccccctgccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||||| |||||||    
T  11150271 gggttaataggcttttaccccccagccatttgggggatttttggtttaccccc 11150323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 11494641 - 11494613
Alignment:
Q  72 tgggttaataggcttttaccccctgccat 100  Q
    |||||||||||||||||||||||||||||    
T  11494641 tgggttaataggcttttaccccctgccat 11494613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 13865043 - 13865095
Alignment:
Q  72 tgggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||| ||||| |||||| ||||||| ||| |||||||||| ||||    
T  13865043 tgggttaataggtttttatcccctgtcatttggtggtattttggtatatcccc 13865095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 3976 - 3924
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  3976 gggttaataggcttttaccccctgccatttgggggacttttggtttatcccct 3924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 385 - 435
Alignment:
Q  72 tgggttaataggcttttacccc-ctgccatttgggggtcttttggtatacc 121  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  385 tgggttaataggcttttacccccctgccatttgggggacttttggtttacc 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 4434 - 4379
Alignment:
Q  73 gggttaataggcttttaccccct-gccatttgggggtcttttggtataccccctat 127  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  4434 gggttaataggcttttatccccttgccatttgggggtcttttggtttaccccctat 4379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 10087 - 10136
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtatacccc 123  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  10087 gggttaataggcttttacccc-tgccatttgggggtcttttggtttacccc 10136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 22458 - 22510
Alignment:
Q  73 gggttaataggcttttaccccct-gccatttgggggtcttttggtataccccc 124  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  22458 gggttaataggcttttacccccccgccatttgggggtcttttggtttaccccc 22510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 23721 - 23669
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggtataccccc 124  Q
    |||||||||||||||||||||| ||||||||| |||| |||||||||||||||    
T  23721 gggttaataggcttttacccccctgccatttgagggttttttggtataccccc 23669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 28783 - 28824
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttg 114  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  28783 gggttaattggcttttaccccctgccatttgggggttttttg 28824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 12244 - 12192
Alignment:
Q  73 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccct 125  Q
    ||||||||| ||||||||||||||||||||  |||  ||||||| ||||||||    
T  12244 gggttaataagcttttaccccctgccatttaagggatttttggtttaccccct 12192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 11308 - 11264
Alignment:
Q  73 gggttaataggcttttaccccc-tgccatttgggggtcttttggt 116  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||    
T  11308 gggttaataggtttttacccccctgccatatgggggtcttttggt 11264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University