View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6937_low_5 (Length: 272)
Name: NF6937_low_5
Description: NF6937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6937_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 29766872 - 29767122
Alignment:
| Q |
1 |
tttcccaggaaatagaggttttcttgtcatgatttcaccaaggatgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29766872 |
tttcccaggaaatagaggttttcttgtcatgatttcaccaaggatgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagc |
29766971 |
T |
|
| Q |
101 |
aattctggagctcggtaccatcgagtaaccacatactcagtcatgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29766972 |
aattctggagctcggtaccatcgagtaaccacatactcagtcatgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcac |
29767071 |
T |
|
| Q |
201 |
aattggaattcagtagtaagttgctaggctttagatcacggtgaagaacgt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29767072 |
aattggaattcagtagtaagttgctaggctttagatcacggtgaagaacgt |
29767122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 11059528 - 11059290
Alignment:
| Q |
5 |
ccaggaaatagaggttttcttgtcatgatttcaccaaggatgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagcaatt |
104 |
Q |
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|||||||| || |||| |||||| | |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| || |
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| T |
11059528 |
ccaggaaagaggggttgtcttgttacgatttcaccaagtatgcaaccaacagaccatatatcaatagctgctgtatattctgaacaattaagaagcagtt |
11059429 |
T |
|
| Q |
105 |
ctggagctcggtaccatcgagtaaccacatactcagtcatgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcacaatt |
204 |
Q |
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| T |
11059428 |
cgggagctctgtaccacctagtaaccacgtactcggtcatgaaatctgtttctgatgttgttctagcaagaccaaagtcgccaatcttaagatcacaatt |
11059329 |
T |
|
| Q |
205 |
ggaattcagtagtaagttgctaggctttagatcacggtg |
243 |
Q |
| |
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|| ||||||||| || ||||||||||| || |||||||| |
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| T |
11059328 |
ggcattcagtagcaaattgctaggcttgaggtcacggtg |
11059290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 41336158 - 41336375
Alignment:
| Q |
26 |
gtcatgatttcaccaaggatgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagcaattctggagctcggtaccatcgag |
125 |
Q |
| |
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||||| |||||||||| ||||||||||||||||| | ||| || || | ||| || || |||||||| || ||||||||||| |||| |||||||| | |
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| T |
41336158 |
gtcataatttcaccaaatatgcaaccaacagaccaaacatcgattgcagaagtgtactcagaacaattgaggagcaattctggggctctgtaccatcttg |
41336257 |
T |
|
| Q |
126 |
taaccacatactcagtcatgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcacaattggaattcagtagtaagttgct |
225 |
Q |
| |
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| || |||||||||||||||||||| |||||||| || || || || | ||| ||||| || || ||||| ||||| || | |||| |||||| || || |
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| T |
41336258 |
tgacaacatactcagtcatgaaatctgtttcagatgttgtccttgccaaaccgaagtcgccaattttaaggtcacagtttgcgttcactagtaaattact |
41336357 |
T |
|
| Q |
226 |
aggctttagatcacggtg |
243 |
Q |
| |
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||||| ||||||||||| |
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| T |
41336358 |
tggcttaagatcacggtg |
41336375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 22668956 - 22668757
Alignment:
| Q |
44 |
atgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagcaattctggagctcggtaccatcgagtaaccacatactcagtca |
143 |
Q |
| |
|
||||||||||| ||||||| |||||| || ||||||||||||||||| || || |||||||| || |||| ||||| ||||| || |||||||| |||| |
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| T |
22668956 |
atgcaaccaaccgaccatacatcaatagcagcagtatattctgaacagttcagtagcaattcaggggctctataccaacgagtcacaacatactctgtca |
22668857 |
T |
|
| Q |
144 |
tgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcacaattggaattcagtagtaagttgctaggctttagatcacggtg |
243 |
Q |
| |
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|||| || || ||||| || ||||| || || |||||||| | || || |||||||| || | ||| || ||||| ||||| || |||||||||||||| |
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| T |
22668856 |
tgaagtctgtctcagaggttgttctggcaagcccaaagtcgcatattttgagatcacagtttgcattgagaagtaaattgcttggttttagatcacggtg |
22668757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 22664477 - 22664278
Alignment:
| Q |
44 |
atgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagcaattctggagctcggtaccatcgagtaaccacatactcagtca |
143 |
Q |
| |
|
||||||||||| ||||||| |||||| || ||||||||||||||||| || || |||||||| || |||| ||||| ||||| || |||||||| |||| |
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| T |
22664477 |
atgcaaccaaccgaccatacatcaatagcagcagtatattctgaacagttcagtagcaattcaggggctctataccaacgagtcacaacatactctgtca |
22664378 |
T |
|
| Q |
144 |
tgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcacaattggaattcagtagtaagttgctaggctttagatcacggtg |
243 |
Q |
| |
|
|||| || || ||||| || ||||| || || |||||||| | || || |||||||| || | ||| || ||||| ||||| || |||||||| ||||| |
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|
| T |
22664377 |
tgaagtctgtctcagaggttgttctggcaagcccaaagtcgcatattttcagatcacagtttgcattgagaagtaaattgcttggttttagatctcggtg |
22664278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 34418718 - 34418606
Alignment:
| Q |
47 |
caaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagcaattctggagctcggtaccatcgagtaaccacatactcagtcatga |
146 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||| || ||| | |||| || | ||||| || |||||||||| |||||| ||||| |||||||| | |
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| T |
34418718 |
caaccaacagaccatacatcaattgctgctgtataatcagaagagtttaacagaagctctggtgcacggtaccatctagtaacaacatattcagtcataa |
34418619 |
T |
|
| Q |
147 |
aatcagtttcaga |
159 |
Q |
| |
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|||| |||||||| |
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| T |
34418618 |
aatcggtttcaga |
34418606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 2608368 - 2608169
Alignment:
| Q |
2 |
ttcccaggaaatagaggttttcttgtcatgatttcaccaaggatgcaaccaacagaccatatatcaatggctgcagtatattctgaacaatttagaagca |
101 |
Q |
| |
|
||||||||||| | |||| ||| ||||| |||||| ||| ||||||||||||||||| | |||||| || | || || ||||||||||| || |||| |
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| T |
2608368 |
ttcccaggaaacaagggttctctggtcataatttcagcaaatatgcaaccaacagaccagacatcaattgcagatgtgtactctgaacaattaaggagca |
2608269 |
T |
|
| Q |
102 |
attctggagctcggtaccatcgagtaaccacatactcagtcatgaaatcagtttcagacgtagttctagctagaccaaagtctccgatcttaagatcaca |
201 |
Q |
| |
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||||||| |||| |||||||| |||||| |||||||| ||||| ||||| ||||| || || || || || | ||||||||| || || ||||| ||||| |
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| T |
2608268 |
attctggggctctgtaccatctagtaacgacatactccgtcataaaatctgtttcggatgttgtccttgccaaaccaaagtccccaattttaaggtcaca |
2608169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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