View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6937_low_9 (Length: 239)
Name: NF6937_low_9
Description: NF6937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6937_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 44912722 - 44912954
Alignment:
| Q |
1 |
gctgctacttgggttgtcatcatgaatccacaaaaatatttccctaataatctttacttctttagtatgcgccgaaaaatatattagttcgcattaccat |
100 |
Q |
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| T |
44912722 |
gctgctacttgggttgtcatcatgaatccacaaaaatatttccctaataatctttacttctttagtatgcgccgaaaaatatattagttcgcattaccat |
44912821 |
T |
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| Q |
101 |
ctgacttgttatgactatagggtttgtgcactaacaataaaagagtttattgtttgttttctcttttaattatacatttattttcgtcataattcatatg |
200 |
Q |
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| T |
44912822 |
ctgacttgttatgactatagggtttgtgcactaacaataaaagagtttattgtttgttttctctttttattatacatttattttcgtcataattcatatg |
44912921 |
T |
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| Q |
201 |
tcattggtttctgaacacttttctgatgatgtc |
233 |
Q |
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| T |
44912922 |
tcattggtttctgaacacttttctgatgatgtc |
44912954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33376754 - 33376691
Alignment:
| Q |
1 |
gctgctacttgggttgtcatcatgaatccacaaaaatatttccctaataatctttacttcttta |
64 |
Q |
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| T |
33376754 |
gctgcaacttgggttgtcatcatgaatccacaaaaatctttcccttataatctttacttcttta |
33376691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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