View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6938_high_1 (Length: 450)
Name: NF6938_high_1
Description: NF6938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6938_high_1 |
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| [»] scaffold0044 (2 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 122 - 433
Target Start/End: Original strand, 88139 - 88448
Alignment:
| Q |
122 |
acattagcgtgaaatcacacagagaacgaaaacattgttactgcaaagttacattgaacccgacgcactttctcgctaaacgcttcttccatcactttac |
221 |
Q |
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| T |
88139 |
acattagcgtgaaatcaca--gagaacgaaaacattgttactgcaaagttacattgatcccgacacactttctcgctaaacgcttcttccgtcactttac |
88236 |
T |
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| Q |
222 |
acacgtcaaatggccgacgaccaaaccaacatggcttcttctctgccactcacggctgccagtaagaggcagcaattgaacacctccaccgaaaccctat |
321 |
Q |
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| T |
88237 |
gtacgtcaaatggccgacgaccgaaccgacatggcttcttctctgccactcacggctgccactaagaggcagcaattgaacacctccaccgaaaccctat |
88336 |
T |
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| Q |
322 |
catcgtcgctgcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtc |
421 |
Q |
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| T |
88337 |
catcgtcgctgcttccaactcttccgttcgatgtgatctctgaaattctctgcaggcttccagtgaagcttctcctacaacttagttgcctctgcaagtc |
88436 |
T |
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| Q |
422 |
atggaaatctct |
433 |
Q |
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|||||||||||| |
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| T |
88437 |
atggaaatctct |
88448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 88062 - 88168
Alignment:
| Q |
13 |
aatatacatagtgttcgccaaccctttattgactcatttcctttcactttctcgccaacagaaaatttgttgtctgaacattatcgcgaaatcacacaga |
112 |
Q |
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| T |
88062 |
aatatacatagtgttcgccaaccctttattgactcatttcctttcactttctcgccaacagaaaatatgttgtctgaacattagcgtgaaatcacagaga |
88161 |
T |
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| Q |
113 |
acgaaaa |
119 |
Q |
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| T |
88162 |
acgaaaa |
88168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 9595456 - 9595399
Alignment:
| Q |
332 |
gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaag |
389 |
Q |
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| T |
9595456 |
gcttccaactcttcctttcgatctaattgctgaaattctatgcaggcttcctgtgaag |
9595399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 7325227 - 7325171
Alignment:
| Q |
332 |
gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaa |
388 |
Q |
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| T |
7325227 |
gcttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaa |
7325171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 7443824 - 7443736
Alignment:
| Q |
332 |
gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagt |
420 |
Q |
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|||||| |||||||| |||||| | || |||| ||||||||||||||||| ||||| | ||| |||||||| | |||||||| |||| |
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| T |
7443824 |
gcttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagt |
7443736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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