View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6938_high_4 (Length: 292)
Name: NF6938_high_4
Description: NF6938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6938_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 43 - 275
Target Start/End: Complemental strand, 44221946 - 44221714
Alignment:
| Q |
43 |
atacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatcacaa |
142 |
Q |
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| T |
44221946 |
atacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatcacaa |
44221847 |
T |
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| Q |
143 |
caaggagtgtctttgagcatgtattgttgtctcattttgttacggtagatgcatgagtataaacaaccacaacccgtcacacaacaaattaatgtatata |
242 |
Q |
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| T |
44221846 |
caaggagtgtctttgagcatgtattgttgtctcattttgttacggtagatgcatgagtataaacaaccacaacccgtcacacaacaaattaatgtatata |
44221747 |
T |
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| Q |
243 |
gagccccgcttacagcacaagctgcaatataat |
275 |
Q |
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| T |
44221746 |
gagccccacttacagcacaagctgcaatataat |
44221714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 44211831 - 44211733
Alignment:
| Q |
40 |
tatatacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatc |
138 |
Q |
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| T |
44211831 |
tatatacataccaatgaccatgttaaatccacggttctcaagttcacgatattcttgacacaaggcgcaggcctcacagcagcaatgaatcaagcaatc |
44211733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 6496201 - 6496106
Alignment:
| Q |
43 |
atacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatc |
138 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||| || || |||||||||| |||||||| |
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| T |
6496201 |
atacataccaatgaccatgttaaatccacggttttcaagctcacgatattcttgacacaaggcgcatgcctcgcagcagcaatgaatcaagcaatc |
6496106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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