View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6938_low_1 (Length: 466)
Name: NF6938_low_1
Description: NF6938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6938_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 1200503 - 1200055
Alignment:
| Q |
18 |
cagacaatgagaattgaaaatgtgaatggattcgaagagttttaaatcgtcttcgattgaagatgttagagaaccatgcatctagaagtgatgtttcata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200503 |
cagacaatgagaattgaaaatgtgaatggattcgaagagttttaactcgtcttcgattgaagatgttagagaaccatgcatctagaagtgatgtttcata |
1200404 |
T |
|
| Q |
118 |
ccttccaaagaggaaaaga--aaagctgtccaggattataccatcagtatgaatcagggctctatcaacaaacctaacaaagtttcgtgttcttcgaagc |
215 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200403 |
ccttccaaagaggaaaagagaaaagctgtccaggattataccatcagtatgaatcagggctctatcaacaaacctaacaaagtttcgtgttcttcgaagc |
1200304 |
T |
|
| Q |
216 |
ctaacaaattgatcattgattaaatcattttgacga-----gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacag |
310 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
1200303 |
ctaacaagttgatcattgattaaatcattttgacgatgatcgtgtaaggagagtttggtgaggaaagtccaacggtgttcccatgttttggataagacag |
1200204 |
T |
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| Q |
311 |
aagtgcgaactgcgtctttggttggaaggaaagagagaatgtgagttatcactggttcagggatcttggtgtggaaaatgtcttctt---cttctttaac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1200203 |
aagtgcgaactgcgtctttggttggaaggaaagagagaatgtgagttatcactggttcagggatcttggtgtggaatatgtcttcttctgcttctttaac |
1200104 |
T |
|
| Q |
408 |
agcatttgcatttgctatttcggcattcttacggcacattccgcttctt |
456 |
Q |
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| T |
1200103 |
agcatttgcatttgctatttcggcattcttaaggcacattccgcttctt |
1200055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 1213591 - 1213484
Alignment:
| Q |
252 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
351 |
Q |
| |
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|||||| ||||| ||||| || |||||||| ||||||||||| | || ||||||| |||||||||||| |||||||||||||| || |||||||||||| |
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| T |
1213591 |
gtgtaaagagagtttggtgagtgaagtccagcggtgttcccaactcttagataagatagaagtgcgaacagcgtctttggttgggagaaaagagagaatg |
1213492 |
T |
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| Q |
352 |
tgagttat |
359 |
Q |
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|||||||| |
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| T |
1213491 |
tgagttat |
1213484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 580070 - 579952
Alignment:
| Q |
253 |
tgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgt |
352 |
Q |
| |
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| T |
580070 |
tgtaaggagagtttggtgatggaagtccaacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgt |
579971 |
T |
|
| Q |
353 |
gagttatcactggttcagg |
371 |
Q |
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||||||||||||||||||| |
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| T |
579970 |
gagttatcactggttcagg |
579952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 1079132 - 1079027
Alignment:
| Q |
254 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
353 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
1079132 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
1079033 |
T |
|
| Q |
354 |
agttat |
359 |
Q |
| |
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|||||| |
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|
| T |
1079032 |
agttat |
1079027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 5132674 - 5132779
Alignment:
| Q |
254 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
353 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
5132674 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
5132773 |
T |
|
| Q |
354 |
agttat |
359 |
Q |
| |
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|||||| |
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| T |
5132774 |
agttat |
5132779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 398
Target Start/End: Original strand, 8193298 - 8193444
Alignment:
| Q |
252 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
351 |
Q |
| |
|
||||| |||||| || || ||||||| ||||||| || |||| |||||||||| | | ||| ||||| || |||| || ||||| |||||||||||| |
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| T |
8193298 |
gtgtatggagagtttagtgagggaagaccaacgggttttccattttttggataaaagaaaagcacgaacagcatcttccgtcggaagaaaagagagaatg |
8193397 |
T |
|
| Q |
352 |
tgagttatcactggttcagggatcttggtgtggaaaatgtcttcttc |
398 |
Q |
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|||||||| | | ||||||||| |||| ||| ||| ||||| ||||| |
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| T |
8193398 |
tgagttattagttgttcagggagcttgttgtagaatatgtcatcttc |
8193444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 8193093 - 8193172
Alignment:
| Q |
23 |
aatgagaattgaaaatgtgaatggattcgaagagttttaaatcgtcttcgattgaagatgttagagaaccatgcatctagaag |
105 |
Q |
| |
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||||||| |||||| || ||||||||||||||| |||||| ||| || ||||||||||||||||||||| ||||||||| |
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| T |
8193093 |
aatgagagttgaaactgcgaatggattcgaagatttttaa---ctctgcggttgaagatgttagagaaccatatatctagaag |
8193172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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