View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6938_low_3 (Length: 357)

Name: NF6938_low_3
Description: NF6938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6938_low_3
NF6938_low_3
[»] chr3 (4 HSPs)
chr3 (7-339)||(10842448-10842780)
chr3 (42-101)||(10842425-10842484)
chr3 (75-131)||(19814985-19815041)
chr3 (66-116)||(485186-485236)
[»] chr7 (7 HSPs)
chr7 (42-131)||(32198937-32199026)
chr7 (77-131)||(6350448-6350502)
chr7 (77-127)||(36659084-36659134)
chr7 (154-206)||(7002905-7002957)
chr7 (154-206)||(7048776-7048828)
chr7 (42-131)||(33387481-33387572)
chr7 (42-130)||(44832205-44832293)
[»] chr1 (2 HSPs)
chr1 (43-112)||(17457469-17457538)
chr1 (72-129)||(38037048-38037105)
[»] chr5 (1 HSPs)
chr5 (42-130)||(23034845-23034933)
[»] chr4 (3 HSPs)
chr4 (150-206)||(15742746-15742802)
chr4 (77-131)||(33846482-33846536)
chr4 (42-131)||(2941354-2941443)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 10842448 - 10842780
Alignment:
Q  7 atggacatcacaaatattagagggtcataaataggaattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaaatc 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  10842448 atggacatcacatatattagagggtcataaataggaattcaacatctagatcgcctttctggacatcacatatattaaagggtcataaataggaagaata 10842547  T
Q  107 tcaaattacatggttagaatatgtgnnnnnnnnnnnnnnnnnnacaaggtcatttttcagactatgtgtatatttcaggttcaatttgaacaattgaccc 206  Q
    |||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  10842548 tcaaattacatggttagaatatgtgtttttattttttatttttacaaggtcatttttcagactatgtgtatattacatgttcaatttgaacaattaaccc 10842647  T
Q  207 tattttgaaaaggaaacatatcatacatattatagactattttgaaggagttttgtttgtaaaactatataataatttttatagactannnnnnnaccct 306  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||    
T  10842648 tattttgaaaaggaaacatatcatacacattatagactattttgaaggagttttgtttgtaaaactataaaataatttttatagactatttttttaccct 10842747  T
Q  307 cacaaataataattcttgatccgccgctctagt 339  Q
    |||||||||||||||||||||||||||||||||    
T  10842748 cacaaataataattcttgatccgccgctctagt 10842780  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 10842425 - 10842484
Alignment:
Q  42 aattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaa 101  Q
    |||||||| |||| |||| |||| |||||||||||||||||| ||||| |||||||||||    
T  10842425 aattcaacctctaaatcgtctttatggacatcacatatattagagggtcataaataggaa 10842484  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 19814985 - 19815041
Alignment:
Q  75 catatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgtg 131  Q
    ||||||||| ||||| | |||||  || |||||||||||||||||||||||||||||    
T  19814985 catatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtg 19815041  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 485236 - 485186
Alignment:
Q  66 tggacatcacatatattaaagggtaataaataggaaaaatctcaaattaca 116  Q
    |||||||||| ||||||| ||||||| |||||| || ||||||||||||||    
T  485236 tggacatcacgtatattagagggtaaaaaatagaaagaatctcaaattaca 485186  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 32199026 - 32198937
Alignment:
Q  42 aattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgtg 131  Q
    |||||||| | |||||||||||||| |||||||||||||||| ||||  | ||||| ||| |||||||||||| | ||||||||||||||    
T  32199026 aattcaacctttagatcgcctttctagacatcacatatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtg 32198937  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 6350502 - 6350448
Alignment:
Q  77 tatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgtg 131  Q
    ||||||| ||||| |||||||  || |||||||||||||||| ||||||||||||    
T  6350502 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtg 6350448  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 36659084 - 36659134
Alignment:
Q  77 tatattaaagggtaataaataggaaaaatctcaaattacatggttagaata 127  Q
    ||||||| ||||| |||||||  ||||||||||||||||||||| ||||||    
T  36659084 tatattacagggttataaataataaaaatctcaaattacatggtcagaata 36659134  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 7002957 - 7002905
Alignment:
Q  154 ggtcatttttcagactatgtgtatatttcaggttcaatttgaacaattgaccc 206  Q
    |||||||||||||||  | |||||||| |||| ||||||||||||||| ||||    
T  7002957 ggtcatttttcagacattatgtatattacaggatcaatttgaacaattaaccc 7002905  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 7048828 - 7048776
Alignment:
Q  154 ggtcatttttcagactatgtgtatatttcaggttcaatttgaacaattgaccc 206  Q
    |||||||||||||||  | |||||||| |||| ||||||||||||||| ||||    
T  7048828 ggtcatttttcagacattatgtatattacaggatcaatttgaacaattaaccc 7048776  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 33387481 - 33387572
Alignment:
Q  42 aattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaa--atctcaaattacatggttagaatatgtg 131  Q
    |||||||| ||||| ||||  || ||||| |  ||||||||||||||| | |||| ||||||  ||||||||||||| ||||| ||||||||    
T  33387481 aattcaacctctaggtcgctcttttggacgttgcatatattaaagggtcaaaaatgggaaaaaaatctcaaattacagggttataatatgtg 33387572  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 44832293 - 44832205
Alignment:
Q  42 aattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgt 130  Q
    |||||||  |||||||| | ||| |||||  ||| ||||||||| ||||| ||||| ||| ||||||||||||||  |||| |||||||    
T  44832293 aattcaatctctagatcacttttttggaccacacgtatattaaaaggtaaaaaataagaagaatctcaaattacaaagttaaaatatgt 44832205  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 17457538 - 17457469
Alignment:
Q  43 attcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaaatctcaaat 112  Q
    ||||||||||||  || ||||||||||| |||||||||||| | ||||| ||||||||| ||| ||||||    
T  17457538 attcaacatctatgtcacctttctggacttcacatatattacatggtaaaaaataggaagaatttcaaat 17457469  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 38037105 - 38037048
Alignment:
Q  72 tcacatatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatg 129  Q
    |||||||||||| ||||||| ||||||||| ||| ||||||||||| | |||||||||    
T  38037105 tcacatatattagagggtaaaaaataggaagaatatcaaattacataggtagaatatg 38037048  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 23034845 - 23034933
Alignment:
Q  42 aattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgt 130  Q
    |||||||  ||||||| || ||| ||||| |||| ||||||| ||||| |||||||| |||||| || ||||||||||| | |||||||    
T  23034845 aattcaatctctagattgcttttttggacttcacgtatattatagggtcataaatagtaaaaatatcgaattacatggtcataatatgt 23034933  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 15742746 - 15742802
Alignment:
Q  150 acaaggtcatttttcagactatgtgtatatttcaggttcaatttgaacaattgaccc 206  Q
    ||||||||| ||||||||||||| ||||||| |||  ||||||||||||||| ||||    
T  15742746 acaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaaccc 15742802  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 33846482 - 33846536
Alignment:
Q  77 tatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgtg 131  Q
    ||||||||||||| | ||||| ||| ||| |||||||||||||||| ||||||||    
T  33846482 tatattaaagggtcaaaaataagaagaatatcaaattacatggttataatatgtg 33846536  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 2941354 - 2941443
Alignment:
Q  42 aattcaacatctagatcgcctttctggacatcacatatattaaagggtaataaataggaaaaatctcaaattacatggttagaatatgtg 131  Q
    ||||||||||||||| |  |||| |||||||||| | ||||| ||||| | |||||| || ||| ||||||||||  |||| ||||||||    
T  2941354 aattcaacatctagacccactttatggacatcacgtgtattatagggtcaaaaatagaaagaatatcaaattacagagttaaaatatgtg 2941443  T

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