View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6938_low_4 (Length: 329)
Name: NF6938_low_4
Description: NF6938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6938_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 55030133 - 55030000
Alignment:
| Q |
187 |
tcattttctgttttatttcatgttagtttgtttgaaaatgcctctagactttgtttgttt---ctgttttccgatcagtttcctttttattttatctagt |
283 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
55030133 |
tcattgtctgttttatttcatgttagtttctttgaaaatgcctctggactttgtttttttttcctgttttcctatcagtttcctttttattttatatagt |
55030034 |
T |
|
| Q |
284 |
ttgaatgtctaaagaagctttgattgggcacagg |
317 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
55030033 |
ttgaatgtctgaagaagctttgattgggcacagg |
55030000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 50337988 - 50338110
Alignment:
| Q |
187 |
tcattttctgttttatttcatgttagtttgtttgaaaatgcctctagactttgtttgtttctgttttccgatcagtttcctttttattttatctagtttg |
286 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50337988 |
tcattttctgttttatttcatgtttgtttctttgaaaatgctactggactgtgtttgtttctgttttcctatcagtttcctttttattttatctagtttg |
50338087 |
T |
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| Q |
287 |
aatgtctaaagaagctttgattg |
309 |
Q |
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||||||| ||||||||||||||| |
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| T |
50338088 |
aatgtctgaagaagctttgattg |
50338110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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