View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6939_high_1 (Length: 457)
Name: NF6939_high_1
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6939_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 440
Target Start/End: Original strand, 41345197 - 41345632
Alignment:
| Q |
4 |
gagtttcgtgttcctgattatgacttgtttgttgaacattgcttgtttcgttcattgacgatggagctgtttctattggcaaactctggtcaggattaat |
103 |
Q |
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| T |
41345197 |
gagtttcatgttcctgattatgacttgtttgttgaacattgcttgtttcgttcattgatgatggagctgtttctattggcaaactctggtcaggattaat |
41345296 |
T |
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| Q |
104 |
actcgtttccggaacaatggttgctatttcattcactgataatggagttgtttccattaccatattacccatttcggatcttggtctacgagaagatcga |
203 |
Q |
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| T |
41345297 |
actcgtttccggaacaatggttgctatttcattcactgataatggagttgtttccattatcatattacccatttcggatcttggtctacgagaagatcga |
41345396 |
T |
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| Q |
204 |
tatcgtggacgacgctgtttttccctttttgcttctaaccattcatttgactcactttctgattctgagtcacttatttccacataatttggtcttgtgc |
303 |
Q |
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| T |
41345397 |
tatcgtggacgacgctgtttttccctttttgcttctaaccattcatttgactcactttctgattctgagtcacttatttccacataatttggtcttgtgc |
41345496 |
T |
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| Q |
304 |
gtaccctcaaagtatatgtcatcttcactgtaataagttatattaatttgatcaaacaatgtaaatttaatgtgttgaaataatgtgacacacaattatt |
403 |
Q |
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| T |
41345497 |
gtaccctcaaagtatatgtcatcttcactgtaataagttat-ttaatttgatcaaacaatgtaaatttaatgtgttgaaataatgtgacacacaattatt |
41345595 |
T |
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| Q |
404 |
aaatagtgcaaaatcaagtttgaataacaataattat |
440 |
Q |
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| T |
41345596 |
aaatagtgcaaaatcaagtttgaataacaataattat |
41345632 |
T |
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