View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6939_high_2 (Length: 453)
Name: NF6939_high_2
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6939_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 54904637 - 54905059
Alignment:
| Q |
18 |
caatgagcaacggatcattatttatctacaagaacaagttaaaaagtaaattatcccctttaacttcgaccgtatttgcaaaatggaggcgatcaaatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54904637 |
caatgagcaacggatcattatttatctacaagaacaagttaaaaagtaaattatcccctttaacttcgacagtatttgcaaaatggaggcgatcaaatat |
54904736 |
T |
|
| Q |
118 |
tttcatgataaactagtctgagatttctttactaaagggaaagttatatataatttgtacctgcaaatggctggatacattttcccttgtaagtccttca |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904737 |
tttcatgataaactagtctgagatttctttacaaaagggaaagttatatataatttgtacctgcaaatggctggatacattttcccttgtaagtccttca |
54904836 |
T |
|
| Q |
218 |
acattcatcaagtcaagtattttcttaggcgaagcctctgcaataacagatgaagaaactacatattaggaacaataatatccatatttaacaatcattc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904837 |
acattcatcaagtcaagtattttcttaggcgaagcctctgcaataacagttgaagaaactacatattaggaacaataatatccatatttaacaatcattc |
54904936 |
T |
|
| Q |
318 |
atcaaattagcaaagtnnnnnnnnnntatatcattgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactca |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904937 |
atcaaattagcaaagtaaaaaaaaaa-atatcattgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactca |
54905035 |
T |
|
| Q |
418 |
tgatcccaaactaaacgaagcttc |
441 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
54905036 |
tgatcccaaactaaacgaggcttc |
54905059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 59 - 322
Target Start/End: Original strand, 54894197 - 54894455
Alignment:
| Q |
59 |
aaaagtaaattatcccctttaacttcgaccgtatttgcaaaatggaggcgatcaaatattttcatgataaactagtctgagatttctttactaaagggaa |
158 |
Q |
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||||||||||||||||||| || | | ||||||||||||||| || | ||||||||||||| || ||||| |||||||| ||| |||||||||||| | |
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| T |
54894197 |
aaaagtaaattatccccttcaaat-caaccgtatttgcaaaaaggcgatgatcaaatattttaataataaagtagtctgatttttttttactaaagggta |
54894295 |
T |
|
| Q |
159 |
agttatatataatttgtacctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgc |
258 |
Q |
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||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||| |
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| T |
54894296 |
agttata----atttgtacctgcaaatggctagctacattttcccttgtaagcccttcaacattcatcaagtcacgtatttttttaggataagcctctgc |
54894391 |
T |
|
| Q |
259 |
aataacagatgaagaaactacatattaggaacaataatatccatatttaacaatcattcatcaa |
322 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
54894392 |
aataatagatgaagaaactacatattaggaacaataatatccatatttaagtatcaatcatcaa |
54894455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 304
Target Start/End: Original strand, 54888573 - 54888814
Alignment:
| Q |
59 |
aaaagtaaattatcccctttaacttcgaccgtatttgcaaaatggaggcgatcaaatattttcatgataaactagtctgagatttctttactaaagggaa |
158 |
Q |
| |
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||||||||| |||||| |||||||||||| |||||||||||| || || ||| ||||||||| ||||||||||||| ||| ||| || || |||| | |
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| T |
54888573 |
aaaagtaaagtatcccttttaacttcgacggtatttgcaaaaaggtggtgataaaatattttaatgataaactagtatgaatttttttgacaaaag---a |
54888669 |
T |
|
| Q |
159 |
agttatatataatttgtacctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgc |
258 |
Q |
| |
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|| || |||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
54888670 |
agaaat-tatagtttgtacctgcaaatggctagctacattttcccttgtaagcccttcaacattcatcaagtcacatatcttcttaggataagcctctgc |
54888768 |
T |
|
| Q |
259 |
aataacagatgaagaaactacatattaggaacaataatatccatat |
304 |
Q |
| |
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|||||||| |||||||| ||||| |||||||||||||||||||||| |
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|
| T |
54888769 |
aataacagttgaagaaagtacatgttaggaacaataatatccatat |
54888814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 441
Target Start/End: Original strand, 54888903 - 54888994
Alignment:
| Q |
350 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttc |
441 |
Q |
| |
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||||||||||||||||||| |||||||||| ||| ||||| ||| ||||||||| ||||| |||| |||||||||||||||| ||||| |
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| T |
54888903 |
attgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttc |
54888994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 434
Target Start/End: Original strand, 54894523 - 54894608
Alignment:
| Q |
349 |
cattgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacg |
434 |
Q |
| |
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|||||||| |||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| | ||||||||| ||||| |
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| T |
54894523 |
cattgtcatataaactcactgtcaaggccaagcagattaactatagaaacaaattttttatgcaactcgttatcccaaacaaaacg |
54894608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 22086071 - 22085982
Alignment:
| Q |
176 |
acctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgcaataaca |
265 |
Q |
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|||||||||||||| | |||||||| || |||| ||||||| |||||||| |||||||||||||| || |||| ||||||||||| |
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| T |
22086071 |
acctgcaaatggcttgccacattttctctggtaatcccttcaatattcatcagctcaagtattttcttcggaacagcccctgcaataaca |
22085982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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