View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6939_high_6 (Length: 277)
Name: NF6939_high_6
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6939_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 6415292 - 6415545
Alignment:
| Q |
5 |
acaaatttaggaagtctttcatatacaacccccaacatgaaatgcaaacaccctctatacaagaacatactcgtgaatcggttttgataaatcaacatca |
104 |
Q |
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| T |
6415292 |
acaaatttaggaagtctttcatatacaacccccaacatgaaatgcaaacaccctctatacgagaacatactcgtgaatcggttttgataaatcaacatca |
6415391 |
T |
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| Q |
105 |
acaaatagtctagcaaaatgtccaattactctatttctagtaggttaatctaatgtaatatacattctaataacacaagcaatctcgactaaagttttag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
6415392 |
acaaatagtctagcaaaatgtccaattactctatttctagtaggttaatccaatgtaatatacattctaataacacaagcaatctcaaataaagttttag |
6415491 |
T |
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| Q |
205 |
gacgtaaatattcctaagggatatcacttaaacaaatctaaacatgttcattag |
258 |
Q |
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| T |
6415492 |
gacgtcaatattcctaagggatatcacttaaacaaatctaaacatgatcattag |
6415545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 6826806 - 6826688
Alignment:
| Q |
84 |
ggttttgataaatcaacatcaacaaatagtctagcaaaatgtccaattactctatttctagtaggttaatctaatgtaatatacattctaataacacaag |
183 |
Q |
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| T |
6826806 |
ggttttgataaatcaacaacaacaagcagcctagcatagtgaccaaatactctatgtctagtgggttcatctaaagtaataggcataccaacatcacaag |
6826707 |
T |
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| Q |
184 |
caatctcgactaaagtttt |
202 |
Q |
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| T |
6826706 |
caatttcaattaaagtttt |
6826688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 55104654 - 55104727
Alignment:
| Q |
84 |
ggttttgataaatcaacatcaacaaatagtctagcaaaatgtccaattactctatttctagtaggttaatctaa |
157 |
Q |
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| T |
55104654 |
ggttttgataaatcaacatcaacaagcagccttgcatagtgaccaaatactttatgtctagtaggttcatctaa |
55104727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 16574353 - 16574470
Alignment:
| Q |
84 |
ggttttgataaatcaacatcaacaaatagtctagcaaaatgtccaattactctatttctagtaggttaatctaatgtaatatacattctaataacacaag |
183 |
Q |
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|||||||||||||||| ||||| || | || ||| || |||||| ||||||||||||||||||| || ||| |||||| ||| | |||| |||||| |
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| T |
16574353 |
ggttttgataaatcaatatcaataagcaaccttgcataaggtccaaacactctatttctagtaggttcatataaagtaataggcataccaatagcacaag |
16574452 |
T |
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| Q |
184 |
caatctcgactaaagttt |
201 |
Q |
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|||| || | |||||||| |
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| T |
16574453 |
caatttcaattaaagttt |
16574470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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