View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6939_high_9 (Length: 254)
Name: NF6939_high_9
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6939_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 48141892 - 48142111
Alignment:
| Q |
19 |
tcattaccttgaacactataagtgctaatattggcattcatgtaaccaatgttggctacatgatcattcaaacagatgttaccaccatttgtattatgaa |
118 |
Q |
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| T |
48141892 |
tcattaccttgaacactataagtgctaatattggcattcatgtaaccaatgttggctacatgatcattcaaacagatgttaccaccatttgtattatgaa |
48141991 |
T |
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| Q |
119 |
atatattgctagtatcagaaatggagctactttgtnnnnnnnnnnnnncatcagtgttactattatcagcattttgaggaaaatgtgaattactattcat |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48141992 |
atatattgctagtatcagaaatggagctactttgtaaaaaactaaaaacatcagtgttactattatcagcattttgaggaaaatgtgaactactattcat |
48142091 |
T |
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| Q |
219 |
gctcactattttggattcat |
238 |
Q |
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|||||||||||||||||||| |
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| T |
48142092 |
gctcactattttggattcat |
48142111 |
T |
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