View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6939_low_15 (Length: 206)

Name: NF6939_low_15
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6939_low_15
NF6939_low_15
[»] chr3 (11 HSPs)
chr3 (10-197)||(8878743-8878930)
chr3 (147-202)||(19913692-19913747)
chr3 (147-202)||(34275404-34275459)
chr3 (147-197)||(8766771-8766821)
chr3 (147-202)||(12770153-12770208)
chr3 (147-202)||(19166205-19166260)
chr3 (147-197)||(8771654-8771704)
chr3 (147-192)||(19578140-19578185)
chr3 (26-84)||(28703726-28703784)
chr3 (147-183)||(13586700-13586736)
chr3 (158-202)||(16227158-16227202)
[»] chr8 (8 HSPs)
chr8 (147-202)||(24721248-24721303)
chr8 (147-192)||(18571640-18571685)
chr8 (147-191)||(26828683-26828727)
chr8 (147-191)||(29761764-29761808)
chr8 (11-87)||(38640694-38640770)
chr8 (147-202)||(21320673-21320728)
chr8 (5-85)||(43658908-43658988)
chr8 (147-202)||(25231785-25231840)
[»] chr7 (7 HSPs)
chr7 (147-202)||(13251679-13251734)
chr7 (147-197)||(19202584-19202634)
chr7 (147-202)||(8315990-8316045)
chr7 (11-85)||(41455424-41455498)
chr7 (147-181)||(39269187-39269221)
chr7 (147-192)||(20578581-20578626)
chr7 (147-191)||(1586663-1586706)
[»] chr4 (3 HSPs)
chr4 (147-197)||(13130780-13130830)
chr4 (147-192)||(25097447-25097492)
chr4 (10-87)||(6799130-6799207)
[»] chr6 (4 HSPs)
chr6 (147-192)||(21844633-21844678)
chr6 (147-192)||(22570983-22571028)
chr6 (147-202)||(9870181-9870236)
chr6 (151-179)||(23843643-23843671)
[»] chr2 (6 HSPs)
chr2 (149-202)||(16815892-16815945)
chr2 (149-202)||(16855049-16855102)
chr2 (147-202)||(25923756-25923811)
chr2 (147-197)||(25533328-25533378)
chr2 (148-192)||(28922638-28922682)
chr2 (34-87)||(8363329-8363382)
[»] scaffold0067 (1 HSPs)
scaffold0067 (11-87)||(7977-8053)
[»] chr5 (5 HSPs)
chr5 (147-191)||(9834608-9834652)
chr5 (147-202)||(24319474-24319529)
chr5 (149-192)||(31599003-31599046)
chr5 (11-82)||(40254866-40254937)
chr5 (147-191)||(9826396-9826440)
[»] chr1 (2 HSPs)
chr1 (28-77)||(47323290-47323339)
chr1 (5-85)||(13016402-13016482)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 8878930 - 8878743
Alignment:
Q  10 agaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcaggtgtttttgaacagtttgttattt 109  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||||    
T  8878930 agaacctgttgtattctgggggaattgcgcaatcttgctgataattgtttagttcagtgacgtagtcacgcctcaggtttatttgaacagtttgttattt 8878831  T
Q  110 tttcagattaatcattttccggtcatccgctacaacactaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 197  Q
    || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8878830 ttgcaggttaatcattttccggtcatctgctacaacactaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 8878743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 19913692 - 19913747
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  19913692 ctaacaacctagaatggatatggaaatatttggctctgaatctcaccggttatgct 19913747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 34275459 - 34275404
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  34275459 ctaacaacctagaatggatatggaaatatttggctctgaatctcaccggttatgct 34275404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 8766771 - 8766821
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 197  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  8766771 ctaacaacctagaatggatatggaaatatttggctctgaatctcaccggtt 8766821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 12770208 - 12770153
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  12770208 ctaagaacctagaatggatatggaaatatttggctctgaatctcaccggttatgct 12770153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 19166260 - 19166205
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||| ||||    
T  19166260 ctaacaacctagaatggatatggaaatatttggctatgaatctcaccggttgtgct 19166205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 8771654 - 8771704
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 197  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  8771654 ctaacaacttagaatggatatggaaatatttggctctgaatctcaccggtt 8771704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 19578185 - 19578140
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  19578185 ctaacaacctagaatggatatggaaatatttggctataaatttcac 19578140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 28703784 - 28703726
Alignment:
Q  26 tgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctca 84  Q
    ||||||| |||||||||  ||| |||||||| |||||||||||||||| ||||||||||    
T  28703784 tgggggagttgcgcaattctgcggataattccttagttcagtgacataatcatgcctca 28703726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 13586700 - 13586736
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctct 183  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  13586700 ctaataacctagaatggatatgaaaatatttggctct 13586736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 16227158 - 16227202
Alignment:
Q  158 gaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||||||| ||||||||| ||||||||||||| |||| ||||    
T  16227158 gaatggatatgaaaatatttgactctaaatctcactggttatgct 16227202  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 24721303 - 24721248
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  24721303 ctaacaacctagaatggatatggaaatatttggctctgaatctcaccggttatgct 24721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 18571640 - 18571685
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  18571640 ctaacaacctagaatggatatggaaatatttggctctgaatctcac 18571685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 26828727 - 26828683
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctca 191  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  26828727 ctaacaacctagaacggatatggaaatatttggctctaaatctca 26828683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 29761808 - 29761764
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctca 191  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  29761808 ctaacaacctagaatggatatggaactatttggctctgaatctca 29761764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 38640770 - 38640694
Alignment:
Q  11 gaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcaggt 87  Q
    |||||||| ||| | ||||||| |||| ||||  ||| |||||||| |||||||||||||||||||| |||||||||    
T  38640770 gaacctgttgtactctgggggagttgcacaattctgcggataattccttagttcagtgacatagtcacgcctcaggt 38640694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 21320673 - 21320728
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| |||| ||||    
T  21320673 ctaacaaactagaatggatatggaaatatttcgctctgaatctcaccggttatgct 21320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 43658908 - 43658988
Alignment:
Q  5 cgagcagaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcag 85  Q
    |||| |||||| || ||| | ||||||| |||||||||  ||| |||||||| |||||| |||||||| ||||||||||||    
T  43658908 cgagaagaaccggttgtactctgggggagttgcgcaattctgcggataattccttagtttagtgacattgtcatgcctcag 43658988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 25231785 - 25231840
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||| ||||||||||||||| || | |||||||| |||| ||||    
T  25231785 ctaacaacctagaatgcatatggaaatatttgtctttgaatctcaccggttatgct 25231840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 13251734 - 13251679
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  13251734 ctaacaacctataatgaatatggaaatatttggctctaaatctcacaggttatgct 13251679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 19202584 - 19202634
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 197  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  19202584 ctaacaacctagaatggatatggaaatatttggctctgaatctcaccggtt 19202634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 8316045 - 8315990
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||    
T  8316045 ctaacaacctagaatggataaggaaatatttagctctaaatctcaccggttatgct 8315990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 41455498 - 41455424
Alignment:
Q  11 gaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcag 85  Q
    |||||||| ||| | ||||||| |||||||||  ||| |||||||| |||||||||||||||||||| |||||||    
T  41455498 gaacctgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcag 41455424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 39269221 - 39269187
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggct 181  Q
    |||||||||||||||||||||||||||||||||||    
T  39269221 ctaacaacctagaatggatatggaaatatttggct 39269187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 20578581 - 20578626
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||    
T  20578581 ctaactacctagaatggatatgaaaatatttggctctgaatctcac 20578626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 1586663 - 1586706
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctca 191  Q
    |||||||| |||||||||| || ||||||||||||||||||||||    
T  1586663 ctaacaacatagaatggatttg-aaatatttggctctaaatctca 1586706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 13130830 - 13130780
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  13130830 ctaacaacctagaatggatatggaaatattgggctctaaatctcaccggtt 13130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 25097447 - 25097492
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||    
T  25097447 ctaacatcctagaatggatatggaaatatttggctctgaatctcac 25097492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 6799130 - 6799207
Alignment:
Q  10 agaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcaggt 87  Q
    ||||||||| ||| | ||||||| | |||||||  ||| |||||||| |||||||||||||||||||| ||| |||||    
T  6799130 agaacctgtagtactttgggggagtcgcgcaattctgcggataattccttagttcagtgacatagtcacgccacaggt 6799207  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 21844678 - 21844633
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  21844678 ctaacaacctagaatggatatggaaatatttggctctgaatctcac 21844633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 22570983 - 22571028
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  22570983 ctaacaacctagaatggatatggaaatatatggctctaaatctcac 22571028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 9870236 - 9870181
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||||||||| |||||||||||| | |||||||| |||| ||||    
T  9870236 ctaacaacctagaatggatatgaaaatatttggctatgaatctcaccggttatgct 9870181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 23843671 - 23843643
Alignment:
Q  151 caacctagaatggatatggaaatatttgg 179  Q
    |||||||||||||||||||||||||||||    
T  23843671 caacctagaatggatatggaaatatttgg 23843643  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 16815892 - 16815945
Alignment:
Q  149 aacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  16815892 aacaacctagaatggatatgaaaatatttggctctaaatctcaccggttatgct 16815945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 16855049 - 16855102
Alignment:
Q  149 aacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  16855049 aacaacctagaatggatatgaaaatatttggctctaaatctcaccggttatgct 16855102  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 25923756 - 25923811
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||| |||| ||||    
T  25923756 ctaacaacctagaatggatatgaaaaaatttggctctgaatctcaccggttatgct 25923811  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 25533328 - 25533378
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggtt 197  Q
    |||||||| || ||||||||||||||||||||||||| |||||||| ||||    
T  25533328 ctaacaacatataatggatatggaaatatttggctctgaatctcaccggtt 25533378  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 28922638 - 28922682
Alignment:
Q  148 taacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||    
T  28922638 taacaacctataatggatatggaaatatttggctttgaatctcac 28922682  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 8363329 - 8363382
Alignment:
Q  34 ttgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcaggt 87  Q
    |||||||||  ||| |||||||| |||||||||||||||||||| || ||||||    
T  8363329 ttgcgcaattctgcggataattccttagttcagtgacatagtcacgcatcaggt 8363382  T

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Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 7977 - 8053
Alignment:
Q  11 gaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcaggt 87  Q
    |||||||| ||| | ||||||| ||||||||| |||| |||||||| ||||||||||||||||||||  ||||||||    
T  7977 gaacctgttgtactctgggggagttgcgcaattttgcggataattccttagttcagtgacatagtcacacctcaggt 8053  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 9834608 - 9834652
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctca 191  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  9834608 ctaacaacctagaatgtatatggaaatatttggctctgaatctca 9834652  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 24319529 - 24319474
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctcacaggttctgct 202  Q
    |||||||||||||||||||| | |||||||||||||| |||||||| |||| ||||    
T  24319529 ctaacaacctagaatggataagaaaatatttggctctgaatctcaccggttatgct 24319474  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 31599046 - 31599003
Alignment:
Q  149 aacaacctagaatggatatggaaatatttggctctaaatctcac 192  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  31599046 aacaacctagaatggatatgaaaatatttggctctgaatctcac 31599003  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40254866 - 40254937
Alignment:
Q  11 gaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcct 82  Q
    |||||||| ||| ||||| ||| |||||||||  ||  |||||||| |||||||||||||||||||| ||||    
T  40254866 gaacctgttgtactatggaggagttgcgcaattctgtggataattccttagttcagtgacatagtcacgcct 40254937  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 9826396 - 9826440
Alignment:
Q  147 ctaacaacctagaatggatatggaaatatttggctctaaatctca 191  Q
    ||||||||||| |||||||||| |||||||||||| | |||||||    
T  9826396 ctaacaacctaaaatggatatgaaaatatttggctttgaatctca 9826440  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 47323290 - 47323339
Alignment:
Q  28 ggggaattgcgcaatcttgctgataattctttagttcagtgacatagtca 77  Q
    ||||||||||||||| |||| |||||||| ||||||| ||||||||||||    
T  47323290 ggggaattgcgcaattttgcggataattccttagttcggtgacatagtca 47323339  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 13016482 - 13016402
Alignment:
Q  5 cgagcagaacctgtggtattatgggggaattgcgcaatcttgctgataattctttagttcagtgacatagtcatgcctcag 85  Q
    |||| ||||||||| ||| ||||||| | || ||||||  ||| |||||||| ||||||||||||||| |||| |||||||    
T  13016482 cgagaagaacctgttgtactatggggaagttacgcaattctgcagataattccttagttcagtgacattgtcacgcctcag 13016402  T

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