View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6939_low_3 (Length: 414)
Name: NF6939_low_3
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6939_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 35377142 - 35377271
Alignment:
| Q |
5 |
gtttggagttgcacgtcttattcagtcaaccactattacaacggcaatgaagtaagtaacattttttatccttgtaaaatcggtaaagtttgatcgtttt |
104 |
Q |
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| T |
35377142 |
gtttggagttgcacgtcttattcagtcaaccactattacaacggcaatgaagtaagtaacattttttatccttgtaaaattggtaaagtttgatcttttt |
35377241 |
T |
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| Q |
105 |
aaactattcaaacataacaagagtctcaag |
134 |
Q |
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| T |
35377242 |
aaactattcaaacataacaagagtctcaag |
35377271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 35377372 - 35377473
Alignment:
| Q |
235 |
taatttaaatcagaaattgaaccactcactaagatttgagacaacacaaagatctggctttcatgccttaaactaatattattggctttacaatcatatg |
334 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35377372 |
taatttaaatcagaaattgaaccactccctaagatttgagacaacacaaagatcttgctttcatgccttaaactaatattattggctttacaatcatatg |
35377471 |
T |
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| Q |
335 |
tt |
336 |
Q |
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|| |
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| T |
35377472 |
tt |
35377473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 35377489 - 35377562
Alignment:
| Q |
323 |
tacaatcatatgttattggaatatgacattatttttcataggcaattcaactacctcctccactccacctgaac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35377489 |
tacaatcatatgttattggaatatgacattatttttcataggcaattcaactacctcctccactccacctgaac |
35377562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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