View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6939_low_5 (Length: 393)
Name: NF6939_low_5
Description: NF6939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6939_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 7434816 - 7434679
Alignment:
| Q |
243 |
ggacaaagaaacaaaagcaagaaccaaattaaattgaaacccttactaattatatttacctgttgctgccagttagctgcatcaagataagctgctggta |
342 |
Q |
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| T |
7434816 |
ggacaaagaaacaaaagcaagaaccaaattaaattgaaaccctttctaattatatttacctgttgctgccagttggctgcatcaagataagctgctggta |
7434717 |
T |
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| Q |
343 |
ttgaagtaaaaaccatgttttctctcgttgaagttttt |
380 |
Q |
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| T |
7434716 |
ttgaagtaaaaaccatgtttcctctcgttgaagttttt |
7434679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7435058 - 7434981
Alignment:
| Q |
1 |
gcagttgttgagagacggagccgccgtttcctggttgttgatgatggttctgttgctgtaataacaaacaacatagac |
78 |
Q |
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| T |
7435058 |
gcagttgttgagagacggagccgccgtttcctggttgttgatgatggttctgttgctgcaataacaaacaacatagac |
7434981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 7434915 - 7434853
Alignment:
| Q |
144 |
tttaagaaatcaaatatttggtatattcatgaagaggtataaataaaagtatcaagaatattg |
206 |
Q |
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| T |
7434915 |
tttaagaaatcaaatatttggtatattcatgaagaggtataaataaaagtatcaagaatattg |
7434853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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