View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_11 (Length: 469)
Name: NF6940_high_11
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 52590248 - 52590684
Alignment:
| Q |
18 |
aaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgnnnnnnnnnnnnnnnnngtcttttatgaatggcatcgtcatcagatgtgg |
117 |
Q |
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| T |
52590248 |
aaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgattattattattattatgtcttttatgaatggcatcgtcatcagatgtgg |
52590347 |
T |
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| Q |
118 |
ctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctccacagttgtaaagttacccaactctgttaaatc |
217 |
Q |
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| T |
52590348 |
ctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctccacagttgtaaagttacccaactctgttaaatc |
52590447 |
T |
|
| Q |
218 |
atatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttaccatgcaattttccatttccacaatctatcacannn |
317 |
Q |
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| T |
52590448 |
atatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttaccatgcaattttccatttccacaatctatcacattt |
52590547 |
T |
|
| Q |
318 |
nnnnctacatgttctctagtggaagaggcttgttgtacactatgatcactagcaataatctgtacattgtctcgtgactcttcttccaatttataattac |
417 |
Q |
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| T |
52590548 |
ttttctacatgttttctagtggaagaggctttttgtacactatgatcactatcaataatttgtacattgtcttgtgactcttcttccaatttattattac |
52590647 |
T |
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| Q |
418 |
cttggagtgtatttccagatgaaaaattgcagttcat |
454 |
Q |
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| T |
52590648 |
cttggagtgtatttccagatgaaaaattgcagttcat |
52590684 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 7301210 - 7301255
Alignment:
| Q |
120 |
aatccatcgctttcacagtttctcaactccaatgcaagagagacat |
165 |
Q |
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| T |
7301210 |
aatccatcactttcagagttcctcaactccaatgcaagtgagacat |
7301255 |
T |
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