View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_12 (Length: 458)
Name: NF6940_high_12
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 40099612 - 40100039
Alignment:
| Q |
17 |
atcatgtgtgtcccacataaatttggcggaacacataaatttcaacctgatggataaaaatatgttgaaaaatatatcttagagggtgtaatgtcaacan |
116 |
Q |
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| T |
40099612 |
atcatgtgtgtcccacataaatttggcggaacacataaatttcaac-tgatggataaaaatatgttgaagaatatatcttagagggtgtaatgtcaacat |
40099710 |
T |
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| Q |
117 |
nnnnnnatacttgcaaacaaaatgcatggttgtgatttttgacttgcttatgcagtatgagtttagtggaaggtttgatttagtgggattcattaaagaa |
216 |
Q |
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| T |
40099711 |
ttttttatacttgcaaacaaaatgcatggttgtgatttttgactggcttatgcagtatgagtttaatggaaggtttgatttagtgggattcattaaagaa |
40099810 |
T |
|
| Q |
217 |
attcaagcacaaggtttatatgtgacccttcgaattggaccatacattgagagtgaatgcacttatgggtaagacctccaacaaatttaattttcaacac |
316 |
Q |
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| T |
40099811 |
attcaagcacaaggtttatatgtgacccttcgaattggaccatatattgagagtgaatgcacttatgggtaagacctccaacaaatttaattttcaacac |
40099910 |
T |
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| Q |
317 |
aagaaatagttttaaataacacattatctattcaatattcataccaaattttttccattgctacattttagaagaaattaactctcaa-ttttttgatgt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
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| T |
40099911 |
aagaaatagttttaaataacacattatctattcaatattcataccaaattttttccattgctacaatttagaagaaattaactctcaattttttttatgt |
40100010 |
T |
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| Q |
416 |
aggggtctaccattatggttacatgatgt |
444 |
Q |
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| T |
40100011 |
aggggtctaccattatggttacatgatgt |
40100039 |
T |
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