View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6940_high_13 (Length: 457)

Name: NF6940_high_13
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6940_high_13
NF6940_high_13
[»] chr8 (4 HSPs)
chr8 (5-457)||(8806006-8806446)
chr8 (359-441)||(11376718-11376800)
chr8 (379-443)||(33808338-33808403)
chr8 (357-441)||(27754417-27754501)
[»] chr1 (4 HSPs)
chr1 (345-441)||(10199381-10199477)
chr1 (379-430)||(4576840-4576891)
chr1 (379-443)||(47498809-47498874)
chr1 (344-416)||(14629964-14630036)
[»] chr6 (3 HSPs)
chr6 (344-422)||(6647387-6647465)
chr6 (379-438)||(31624125-31624184)
chr6 (383-435)||(33887869-33887921)
[»] chr3 (1 HSPs)
chr3 (344-441)||(39602183-39602280)
[»] chr7 (2 HSPs)
chr7 (344-420)||(25596033-25596109)
chr7 (381-440)||(34035954-34036014)
[»] chr2 (2 HSPs)
chr2 (353-443)||(12313144-12313234)
chr2 (247-279)||(5942807-5942839)
[»] chr4 (2 HSPs)
chr4 (371-404)||(39438548-39438581)
chr4 (379-435)||(23459663-23459719)
[»] chr5 (1 HSPs)
chr5 (372-420)||(22020347-22020395)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 457
Target Start/End: Original strand, 8806006 - 8806446
Alignment:
Q  5 aatgtggttgataacatagtttaattgagtgtttagcactccaaatactt---tatgctagcaaaa-tcattagaagaagtttacaatgtaatgctactt 100  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||    
T  8806006 aatgtggctgataacatagtttaattgagtatttaggacttcaaatacttacttatgctagcaaaaatcattagaagaagtttacaatgtaatgctactt 8806105  T
Q  101 accagcaatgataaccatttttctttgatcatgtcttttgatgtagcagtcacttccatatgcttcctttccatccttgatacaggctacagtggaaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  8806106 accagcaatgataaccatttttctttgatcatgtcttttgatatagcagtcacttccatatgcttcctttccattcttgatacatgctgcagtggaaata 8806205  T
Q  201 catcaagcaatacttaggtttccaaattttcttccatttaggagacgtttggataaacaccttaattaagcgcttattgtaaaaagtggttatgtatcag 300  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8806206 catgaagtaatacttaggtttccaaattttcttccatttaggagacatttggataaacaccttaattaagcgattattgtaaaaagtggttatgtatcag 8806305  T
Q  301 ctatttatgcaattgataaagataataataagggaaaactctatataagctctttacataagctagtttagagagttaatgaaaataagttgaacacaac 400  Q
    |||||||||||| ||||||||   ||||| ||||||||||||||| |||  |||||||||||||| |||||| |||| || |||||||||              
T  8806306 ctatttatgcaactgataaag---ataatgagggaaaactctatagaagtcctttacataagctaatttagatagtttataaaaataagt---------- 8806392  T
Q  401 ttattaacatatcataagctatgttcataacttcttccaaacacctgcataagtgct 457  Q
       ||||||||||||||||||| |||||||||| |||||||||| |||||| |||||    
T  8806393 ---ttaacatatcataagctattttcataacttattccaaacacatgcatatgtgct 8806446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 441
Target Start/End: Original strand, 11376718 - 11376800
Alignment:
Q  359 taagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttcttccaaa 441  Q
    ||||||| |||||||| |  ||||||||||| |||| ||||  ||||||||| ||| ||||||| ||||||| |||| |||||    
T  11376718 taagctattttagagaatctatgaaaataagctgaaaacaagatattaacatgtcacaagctattttcataagttctcccaaa 11376800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 33808338 - 33808403
Alignment:
Q  379 atgaaaataagttgaacacaacttattaaca-tatcataagctatgttcataacttcttccaaaca 443  Q
    ||||||||||| | || ||||||||| |||| ||||||||||||| ||||||| |||| |||||||    
T  33808338 atgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaaca 33808403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 441
Target Start/End: Original strand, 27754417 - 27754501
Alignment:
Q  357 cataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttcttccaaa 441  Q
    ||||||||| ||| ||||| | ||||||||||| ||||| |||||||| | ||| |||||| || | ||||||| |||| |||||    
T  27754417 cataagctattttggagagcttatgaaaataagctgaacgcaacttataatcatgtcataaactgttttcataagttctcccaaa 27754501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 10199477 - 10199381
Alignment:
Q  345 ataagctctttacataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttcttccaaa 441  Q
    ||||||| ||| ||||||||| ||||||||| | ||||||||||| |||| ||||||||| ||||| ||||||||||| ||||| | |||| |||||    
T  10199477 ataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaa 10199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 4576840 - 4576891
Alignment:
Q  379 atgaaaataagttgaacacaacttattaacatatcataagctatgttcataa 430  Q
    ||||||||||| |||||||||||||| ||||| |||||| |||| |||||||    
T  4576840 atgaaaataagctgaacacaacttataaacatgtcataaactattttcataa 4576891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 47498874 - 47498809
Alignment:
Q  379 atgaaaataagttgaacacaacttattaaca-tatcataagctatgttcataacttcttccaaaca 443  Q
    ||||||||||| | || ||||||||| |||| ||||||||||||| ||||||| |||| |||||||    
T  47498874 atgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaaca 47498809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 14630036 - 14629964
Alignment:
Q  344 tataagctctttacataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcata 416  Q
    |||||||| ||| |||||||||  || |||| || ||| ||||||| |||| ||||||||| |||||||||||    
T  14630036 tataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaacatatcata 14629964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 6647387 - 6647465
Alignment:
Q  344 tataagctctttacataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagctat 422  Q
    ||||| || ||| |||||||||  |||||||| | |||||||||||||||| ||| ||||| ||||| |||||||||||    
T  6647387 tataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcataagctat 6647465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 31624125 - 31624184
Alignment:
Q  379 atgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttcttcc 438  Q
    |||||||||||||||| ||| ||||| ||||| ||||||||| | ||||||| |||||||    
T  31624125 atgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttcttcc 31624184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 33887869 - 33887921
Alignment:
Q  383 aaataagttgaacacaacttattaacatatcataagctatgttcataacttct 435  Q
    |||||||||||| ||||||| | ||||| ||||||||||| ||||||| ||||    
T  33887869 aaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattct 33887921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 441
Target Start/End: Complemental strand, 39602280 - 39602183
Alignment:
Q  344 tataagctctttacataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttcttccaaa 441  Q
    |||||||| ||| |||||||||  || ||||  | |||||||||||||||| |||| |||| ||||| ||||||||| | |||||||  |||||||||    
T  39602280 tataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaa 39602183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 25596033 - 25596109
Alignment:
Q  344 tataagctctttacataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagct 420  Q
    ||||| |||||| |||||||||  || ||||| | |||||||||||||||| |||||||| |||| | |||||||||    
T  25596033 tataaactcttttcataagctatcttggagagcttatgaaaataagttgaaaacaacttagtaacttgtcataagct 25596109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 34035954 - 34036014
Alignment:
Q  381 gaaaataagttgaacacaacttattaac-atatcataagctatgttcataacttcttccaa 440  Q
    |||||||||||||| ||||||||| ||| || ||||||| ||| ||||||| |||||||||    
T  34035954 gaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttcttccaa 34036014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 12313234 - 12313144
Alignment:
Q  353 tttacataagctagtttagagagttaatgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttcttccaaaca 443  Q
    |||||||||||||  || ||||| | ||||||||||| ||||  |||||||| |||||  |||||||| | ||||||| |||| |||||||    
T  12313234 tttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaacatggcataagctgttttcataaattctcccaaaca 12313144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 5942807 - 5942839
Alignment:
Q  247 gtttggataaacaccttaattaagcgcttattg 279  Q
    ||||||||||||| |||||||||||||||||||    
T  5942807 gtttggataaacaacttaattaagcgcttattg 5942839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 39438581 - 39438548
Alignment:
Q  371 gagagttaatgaaaataagttgaacacaacttat 404  Q
    |||||||||||||||||||||||| |||||||||    
T  39438581 gagagttaatgaaaataagttgaaaacaacttat 39438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 23459663 - 23459719
Alignment:
Q  379 atgaaaataagttgaacacaacttattaacatatcataagctatgttcataacttct 435  Q
    ||||| |||||||||| | ||||||||||||| ||||||||| | ||||||| ||||    
T  23459663 atgaatataagttgaaaataacttattaacatgtcataagcttttttcataagttct 23459719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22020347 - 22020395
Alignment:
Q  372 agagttaatgaaaataagttgaacacaacttattaacatatcataagct 420  Q
    |||||| | |||||||||||||| |||||||||| |||| |||||||||    
T  22020347 agagtttacgaaaataagttgaaaacaacttattgacatgtcataagct 22020395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University