View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_15 (Length: 398)
Name: NF6940_high_15
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 2664923 - 2665320
Alignment:
| Q |
1 |
agttttccatcattgttgaatgttaatgtaccattgtgatcaagaagtggtttatctctatttgcaacccaaacaatattctttatgtgaatttgcttat |
100 |
Q |
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| T |
2664923 |
agttttccatcattgttgaatgttaatgtaccattgtgatcaagaagtggtttatctctatttgcaacccaaacaatattctttatgtgaatttgcttat |
2665022 |
T |
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| Q |
101 |
accatattccaagataagtgtaagtggaatttttaggtgtaaagaaaccaagttcaaaattttgtgaaggtgaaattagtgtttggttaccagtgatgaa |
200 |
Q |
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| T |
2665023 |
accatattccaagataagtgtaagtggaatttttaggtgtaaagaaaccaagttcaaaattttgtgaaggtgaaattagtgtttggttaccagtgatgaa |
2665122 |
T |
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| Q |
201 |
ttgcggtggagttatggtatcttctgcttttgaaggtattggaaacaatgttgttaaatggaaacaagtagcaagaagtagaaagaagaactcagttttc |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2665123 |
ttgtggtggagttatggtatcttctgcttttgaaggtattggaaacaatgttgttaaatggaaacaagtagcaagaagtagaaagatgaactcagttttc |
2665222 |
T |
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| Q |
301 |
tccatgattagttttttatccttcacnnnnnnnnnnnnnnnnnnngtacttatataaagaaaatctgcattatttaatcatactactgttcttaaaat |
398 |
Q |
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| T |
2665223 |
tccatgattagttttttatccttcacattattattattattattagtacttatataaagaaaatctgcattatttaatcatactactgttcttaaaat |
2665320 |
T |
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