View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_17 (Length: 375)
Name: NF6940_high_17
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 36621894 - 36622243
Alignment:
| Q |
19 |
tgatgtactagtgcatgattcactcatttggatccaaagccaaaccataagaaatcaatgttcaaagatgtcaaattcgaaaacctagataatagctatt |
118 |
Q |
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| T |
36621894 |
tgatgtactagtgcatgattcactcatttggatccaaagccaaaccataagaaatcaatgttcaaagatgtcaaattcgaaaacctagataatagctatt |
36621993 |
T |
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| Q |
119 |
aggaagtggggaagcaatattaatccctacacctaaaaatccattagctccaatatttgatgaagaaacattggattgttccatcatgcatttgctagca |
218 |
Q |
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| T |
36621994 |
aggaagtggggaagcaatattaatccctacacctaaaaatccattagctccaatatttgatgaagaaacattggattgttccatcatgcatttgctagca |
36622093 |
T |
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| Q |
219 |
atttttccaagattcttcctcaggtcctcaatagaaacctttaactggagcaattcattcaagccaagttcatcaacagggctttcccaccaaaattgca |
318 |
Q |
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| T |
36622094 |
atttttccaagattcttcctgaggtcctcaatagaaacctttaattggagcaattcattcaagccaagttcatcaacagggctttcccaccaaaattgca |
36622193 |
T |
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| Q |
319 |
tttgcctagcttttctcacatgatctatctcttccccttgcttcttctca |
368 |
Q |
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| T |
36622194 |
tttgcctagcttttctcacatgatctatctcttccccttgcttcttctca |
36622243 |
T |
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