View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_22 (Length: 333)
Name: NF6940_high_22
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 8317204 - 8317500
Alignment:
| Q |
19 |
agaacaagacattgaattttattatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactctggg |
118 |
Q |
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| T |
8317204 |
agaacaagacattgaattttataatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactctggg |
8317303 |
T |
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| Q |
119 |
tatggtacagcacaactaattcatttgttcgatcatggtttcctgtcttttgattcagctgaaatcatttgtaagccaagttttcctgaaacagaacgca |
218 |
Q |
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| T |
8317304 |
tatggtacagcacaactaattcatttgttcgatcatggtttcctgtcttttgattcagctgaaatcatttgtaagccaagttttcctgaaacagaacgca |
8317403 |
T |
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| Q |
219 |
ttccttttctcgttcaccttttaaagcaatttcaccacgtgaaatctatcaaaattgaggggttggacttgaatattgaggtaagcatgtgcgcgcg |
315 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8317404 |
ttccttttctcgttcaccttttaaagcaatttcatcgcgtgaaatctatcaaaattgaggggttggacttgaatattgaggtaagcatgcgcgcgcg |
8317500 |
T |
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