View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6940_high_23 (Length: 325)
Name: NF6940_high_23
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 139 - 306
Target Start/End: Complemental strand, 13671908 - 13671741
Alignment:
| Q |
139 |
ctatgatgggagacatggcaggtcaaatcttacatggttgaaagaatctannnnnnnagaatggaaacaaacatatcatcttaccaaccatttttcacac |
238 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671908 |
ctatgatgggagacgtggcaggtcaaatcttacatggttgaatgaatctacccccccagaatggaaacaaacatatcatcttaccaaccatttttcacac |
13671809 |
T |
|
| Q |
239 |
catttaataaacatagcttgattttcaatttcaagggcttgcactattaaattaagtattgtacgcag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671808 |
catttaataaacatagcttgattttcaatttcaagggcttgcactattaaattaagtattgtacgcag |
13671741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 13672033 - 13671949
Alignment:
| Q |
13 |
aatataatgcaggtaatatatggcataatatgaacatttaaaactcaatactttcaacaacgcaattattaattatgccaatttt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13672033 |
aatataatgcaggtaatatatagcataatatgaacatttaaaactcaatactttcaacaacgcaattattaattatgccaatttt |
13671949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University