View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6940_high_24 (Length: 319)

Name: NF6940_high_24
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6940_high_24
NF6940_high_24
[»] chr5 (6 HSPs)
chr5 (1-299)||(788078-788375)
chr5 (18-242)||(35811167-35811394)
chr5 (13-119)||(32278688-32278794)
chr5 (2-84)||(36868313-36868395)
chr5 (2-292)||(19215403-19215697)
chr5 (28-74)||(36150672-36150718)
[»] chr6 (4 HSPs)
chr6 (2-241)||(25167864-25168109)
chr6 (3-74)||(10990046-10990117)
chr6 (2-148)||(3949355-3949502)
chr6 (4-72)||(4263398-4263466)
[»] chr4 (4 HSPs)
chr4 (2-241)||(37050021-37050267)
chr4 (2-74)||(24239870-24239942)
chr4 (2-74)||(16832167-16832239)
chr4 (31-242)||(18522152-18522369)
[»] chr2 (6 HSPs)
chr2 (2-194)||(37344640-37344836)
chr2 (1-244)||(14296112-14296358)
chr2 (2-73)||(31092337-31092408)
chr2 (4-73)||(18693124-18693193)
chr2 (7-84)||(18811722-18811799)
chr2 (3-74)||(8413844-8413915)
[»] chr1 (9 HSPs)
chr1 (2-238)||(13061820-13062061)
chr1 (2-81)||(3374324-3374403)
chr1 (2-191)||(14344076-14344267)
chr1 (11-74)||(41035052-41035115)
chr1 (2-88)||(50903495-50903581)
chr1 (2-81)||(17114734-17114813)
chr1 (2-73)||(49491908-49491978)
chr1 (6-72)||(19394156-19394222)
chr1 (6-72)||(39332359-39332425)
[»] chr7 (3 HSPs)
chr7 (2-78)||(19407866-19407942)
chr7 (133-206)||(7543997-7544071)
chr7 (6-72)||(33191303-33191369)
[»] chr8 (5 HSPs)
chr8 (1-84)||(27786804-27786887)
chr8 (1-84)||(36206437-36206520)
chr8 (1-73)||(8831250-8831322)
chr8 (2-81)||(29369124-29369203)
chr8 (1-70)||(30646384-30646453)
[»] chr3 (5 HSPs)
chr3 (2-88)||(16893098-16893184)
chr3 (7-84)||(51524893-51524970)
chr3 (2-255)||(35526403-35526660)
chr3 (2-84)||(29346819-29346901)
chr3 (150-238)||(29346971-29347060)
[»] scaffold0531 (1 HSPs)
scaffold0531 (5-74)||(10283-10352)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 788375 - 788078
Alignment:
Q  1 atgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcgg 100  Q
    ||||||||| |||||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||| ||    
T  788375 atgaacaaaatgaagccttctaactttaactcagacgctatgaggactcgtgcccaaaagggttcctccaaagccgccttgacatatatagaataattgg 788276  T
Q  101 ttcaattgcaacaaaatatcgaggaataccaaacttttgttcaaatttcagatagggtagtcttttagccgtggtttggccatgaatggtcataatttgt 200  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  788275 ttcaattgcaacagaatatcggagaataccaaacttttgttcaaatttcagagagggtagtcttttagctgtggtttggccatgaatggtcataatttgt 788176  T
Q  201 ctagttattttacaatggttgtttttgacacctctttccttaaggtcatttccttcttagaatagattcattttctcttttaatagattttatactatg 299  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| || | ||||| |||||||||||||||||||||| |||||||||| ||||||    
T  788175 ctagtt-ttttacaatggttgtctttgacacctctttccttaaggtctttcctttcttggaatagattcattttctctttttatagattttacactatg 788078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 35811167 - 35811394
Alignment:
Q  18 ttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggttcaattgcaacaaaat 117  Q
    ||||| |||||| ||||  || ||||||||| ||| |||||| |||    ||||||| ||||||||| ||||| |  | | ||||||||||||||| |||    
T  35811167 ttctaactttaattcagttggaatgaggactcgtgtccaaaatggtattaccaaagc-gccttgacaaatataaaatagttggttcaattgcaacataat 35811265  T
Q  118 atcgaggaataccaa-acttttgttcaaattt-cagatagggtagtcttttagccgtggtttggccatgaatggtcataatttgtctagttat--tttac 213  Q
    ||   |||||||||| |||||||||||||||| || | ||||||||||||||||||| ||||| ||| ||||  |||||||||| |||||| |  |||||    
T  35811266 atttgggaataccaatacttttgttcaaattttcatagagggtagtcttttagccgttgtttgaccaagaataatcataatttgactagtttttctttac 35811365  T
Q  214 aatggttgtttttgacacctctttcctta 242  Q
     ||| |||||||||| |||||||||||||    
T  35811366 gatgcttgtttttgatacctctttcctta 35811394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 32278794 - 32278688
Alignment:
Q  13 aagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggttcaattgcaac 112  Q
    ||||||||||| |||||||||||||| |||| || | || ||||||||||| |||||||||||||||||||| ||| |||  | | ||||||||||||||    
T  32278794 aagccttctagttttaactcagccggaatgaagattcgttcccaaaagggtacctccaaagccgccttgacagatacagaatagtgggttcaattgcaac 32278695  T
Q  113 aaaatat 119  Q
    |||||||    
T  32278694 aaaatat 32278688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 36868313 - 36868395
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgaca 84  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |  ||| |||||||||||||||||||||  ||||||||    
T  36868313 tgaataaagtgaagccttctagctttaactcagccggaatgagggcccgtgtccaaaagggttcctccaaagctaccttgaca 36868395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 19215403 - 19215697
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    |||||||||||| ||| |||||||||||||||||| | ||||||||  | |||||||||||| ||| |||| | |||||| || ||| |||  | | |||    
T  19215403 tgaacaaagtgatgccgtctagctttaactcagcccgaatgaggacccgagcccaaaagggtaccttcaaaactgccttggcagatacagaatagttggt 19215502  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaattt---cagatagggtagtcttttagccgtggtttggccatgaatggtcataatt 197  Q
      |||||| | | ||| || ||||||  ||| |||| | |||||||||   |||| |||| ||||||||||| || ||||||||| |||  | |||||||    
T  19215503 cgaattgc-atagaatttctaggaatgtcaatacttctattcaaattttcacagagagggcagtcttttagctgttgtttggccaagaacagacataatt 19215601  T
Q  198 tgtctagttat-tttacaatggttgtttttgacacctctttccttaaggtcatttcc-ttcttagaatagattcattttctcttttaatagatttta 292  Q
    || |||||| | | || ||||||||| |||||||||| |||| || ||||| ||||| ||||| ||||||||  | |||||||||| |||| |||||    
T  19215602 tgactagttttctgtataatggttgtctttgacacctatttcatt-aggtcctttcctttcttggaatagatctagtttctcttttcataggtttta 19215697  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 36150718 - 36150672
Alignment:
Q  28 aactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    ||||||||||| ||||||||| |||||||||||| | ||||||||||    
T  36150718 aactcagccggaatgaggactcgtgcccaaaaggatacctccaaagc 36150672  T

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Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 25167864 - 25168109
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||  ||||||||||||| |||||||||||||||||||| ||| |||  | | |||    
T  25167864 tgaacaaagtgaagccttctagttttaactcagccggaaagaggactcatgcccaaaagggtacctccaaagccgccttgacagatacagaatagttggt 25167963  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaattt---cagatagggtagtcttttagccgtggtttggccatgaatggtcata-at 196  Q
    |||||||||||| |||||   |||||||||| ||||||||||||||||    ||| || |||||||||||| ||| ||||||||| | |||||||||  |    
T  25167964 tcaattgcaacagaatatatgggaataccaatacttttgttcaaattttcatagaaagagtagtcttttagtcgttgtttggccaagtatggtcatactt 25168063  T
Q  197 ttgtctagttattt-tacaatggttgtttttgacacctctttcctt 241  Q
    ||| |||||| ||| | || ||||||  ||||||||||| ||||||    
T  25168064 ttgactagttttttgttcattggttgcctttgacacctcgttcctt 25168109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 10990046 - 10990117
Alignment:
Q  3 gaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    |||||||||||| |||||||||||||||| |||||  ||||||||| |||| ||||||||||||||||||||    
T  10990046 gaacaaagtgaatccttctagctttaacttagccgaaatgaggactcgtgcacaaaagggttcctccaaagc 10990117  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 3949355 - 3949502
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    |||| |||||||||| || ||| ||||||| |||| | ||||||||| |||  || |||||| |||||||||||||||||||| ||  |||  | | | |    
T  3949355 tgaataaagtgaagctttttagttttaactgagccagaatgaggactcgtgttcagaagggtacctccaaagccgccttgacagatgcagaatagttgat 3949454  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaattt 148  Q
    |||||||||||| ||||||   ||||||||| ||||||||||||||||    
T  3949455 tcaattgcaacagaatatctgagaataccaatacttttgttcaaattt 3949502  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 4263466 - 4263398
Alignment:
Q  4 aacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaa 72  Q
    |||||| |||||||| |||| |||||||||||||| ||||||||  |||| ||||||||||||||||||    
T  4263466 aacaaaatgaagcctgctagttttaactcagccggaatgaggacccgtgctcaaaagggttcctccaaa 4263398  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 37050021 - 37050267
Alignment:
Q  2 tgaacaaagtgaagcctt-ctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcgg 100  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||| | ||| | |  | | ||    
T  37050021 tgaacaaagtgaagcctttctagttttaactcagccggaatgaggactcgtgcccaaaagggtacctccaaagccgctttgagagatacaaaatagttgg 37050120  T
Q  101 ttcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaattt---cagatagggtagtcttttagccgtggtttggccatgaatggtcata-a 195  Q
    ||||||||||||| |||||   |||||||||| ||||||||||||||||    ||| || |||||||||||| ||| ||||||||| | |||||||||      
T  37050121 ttcaattgcaacagaatatatgggaataccaatacttttgttcaaattttcatagagagagtagtcttttagtcgttgtttggccaagtatggtcatact 37050220  T
Q  196 tttgtctagttattt-tacaatggttgtttttgacacctctttcctt 241  Q
    |||| |||||| ||| | || ||||||| ||||| ||||| ||||||    
T  37050221 tttgactagttttttgttcattggttgtctttgatacctcgttcctt 37050267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 24239942 - 24239870
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||| |||| |||||    
T  24239942 tgaataaagtgaagcctactagctttaactcagccggaatgaggacccgtgcccaaaagggtacctcaaaagc 24239870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 16832239 - 16832167
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    ||||||||||||||||| ||| |||||||||||  || ||||||||  |||  ||||||||| ||||||||||    
T  16832239 tgaacaaagtgaagcctactaactttaactcagttggaatgaggacacgtgttcaaaagggtgcctccaaagc 16832167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 18522369 - 18522152
Alignment:
Q  31 tcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggttcaattgcaacaaaatatcgaggaatacc 130  Q
    |||||||| |||||||   |||| ||||||| | ||||||||| || |||| || |||||||  | | |||||| ||||| || |||||   ||||||      
T  18522369 tcagccggaatgaggatccgtgctcaaaaggatgcctccaaagtcgacttggcagatatagaatagttggttcagttgcagcagaatattcgggaatatg 18522270  T
Q  131 aa-acttttgttcaaatttc---agatagggtagtcttttagccgtggtttggccatgaatggtcataatttgtctagttat--tttacaatggttgttt 224  Q
    || ||||||||||||||||    ||| ||  |||||| |||||  | ||||||||| ||||||||||||||||||||||| |  | | || ||||||| |    
T  18522269 aatacttttgttcaaattttcatagagagtatagtctattagcttttgtttggccaagaatggtcataatttgtctagtttttatgtccattggttgtct 18522170  T
Q  225 ttgacacctctttcctta 242  Q
    |||| |||||||||||||    
T  18522169 ttgaaacctctttcctta 18522152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 37344640 - 37344836
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    ||||||||||||| | |||||| |||||||||||||| ||||||| | ||||||||||||||  ||||||||||||||||||||||| | |  | | | |    
T  37344640 tgaacaaagtgaatcattctagttttaactcagccggaatgaggattcgtgcccaaaagggtatctccaaagccgccttgacatatacataatagttgat 37344739  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaatt---tcagatagggtagtcttttagccgtggtttggccatgaatggtcata 194  Q
    ||| ||||| || ||||||  |||||||||| | |||||||||||||   | | | || |||||||| ||| ||| ||||||||| |||||||||||    
T  37344740 tcatttgcagcataatatctgggaataccaatatttttgttcaaattttcttatagagagtagtcttctagtcgttgtttggccaagaatggtcata 37344836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14296358 - 14296112
Alignment:
Q  1 atgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcgg 100  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||| ||| ||| |||||||||| |||||||||  |||||| || ||| | |  | | ||    
T  14296358 atgaacaaaatgaagcctactagctttaactcagccggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttgg 14296259  T
Q  101 ttcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaa-tttcagatagggtagtcttttagccgtggtttggccatgaatggtcataattt 198  Q
    ||||||||||| | ||||    ||||||  || ||||||||||||| ||||  | ||||||||||| |||| || | |||| || |||||||||| ||||    
T  14296258 ttcaattgcaatagaataagtgggaatataaatacttttgttcaaattttcgtagagggtagtcttgtagcagttgattgg-caagaatggtcattattt 14296160  T
Q  199 gtctagttatt--ttacaatggttgtttttgacacctctttccttaag 244  Q
    |||||||| ||   | ||||||| || |||||||||||||||||||||    
T  14296159 gtctagtttttccctgcaatggtggtctttgacacctctttccttaag 14296112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 31092337 - 31092408
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaag 73  Q
    |||| ||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  31092337 tgaataaagtgatgccttctagatttaactcagccggaatgaggactcgtgcccaaaagggtacctccaaag 31092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 18693124 - 18693193
Alignment:
Q  4 aacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaag 73  Q
    |||||||||||| || |||||||||||| |||||| |||||||| |||||| ||||||||||||||||||    
T  18693124 aacaaagtgaagtctgctagctttaactaagccggaatgaggacctgtgcctaaaagggttcctccaaag 18693193  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 18811799 - 18811722
Alignment:
Q  7 aaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgaca 84  Q
    |||||||||| || |||||||||||||||||| ||||||||  ||||||||||||| |||||||||||  ||||||||    
T  18811799 aaagtgaagctttatagctttaactcagccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgaca 18811722  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 8413915 - 8413844
Alignment:
Q  3 gaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    |||||||||||||||| ||||||| |||||| |||| ||||||||  |||| ||||||||| ||||||||||    
T  8413915 gaacaaagtgaagcctactagcttcaactcaaccggaatgaggacccgtgctcaaaagggtacctccaaagc 8413844  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 13062061 - 13061820
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    |||||||||||| ||||| |||||||||||||||||  ||||||||  ||||  ||||| || |||||||||||||||||||| ||| |||  ||| |||    
T  13062061 tgaacaaagtgatgccttttagctttaactcagccgaaatgaggacccgtgctgaaaagagtacctccaaagccgccttgacaaatacagaataattggt 13061962  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaattt---cagatagggtagtcttttagccgtggtttggccatgaatggtcataatt 197  Q
     ||||||||| |  |||    |||||   || ||||||||||||||||    ||| |||||||||||||||| || ||||||||  |||||||| || ||    
T  13061961 ccaattgcaaaagtatagatgggaatgttaatacttttgttcaaattttcatagagagggtagtcttttagctgttgtttggcctagaatggtcgtagtt 13061862  T
Q  198 tgtctagttat-tttacaatggttgtttttgacacctctttc 238  Q
    || |||||| | | | |||||||||| |||||||||||||||    
T  13061861 tgactagttttctgttcaatggttgtatttgacacctctttc 13061820  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 3374324 - 3374403
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttg 81  Q
    ||||||||||||||||  |||| |||||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||    
T  3374324 tgaacaaagtgaagccggctagatttaactcagccggaatgaggacatgtgcccaaaagggtagctccaaagctgccttg 3374403  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 14344076 - 14344267
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    |||||||||||||||||||||| |||||||||  ||| |||| |||| ||| |||||||||| ||||||||| || ||||||| ||| | |  | | ||     
T  14344076 tgaacaaagtgaagccttctagttttaactcaatcggaatgatgactcgtgtccaaaagggtacctccaaagtcgacttgacagatacata-tagttgg- 14344173  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaa---atttcagatagggtagtcttttagccgtggtttggccatgaatggtc 191  Q
    |||||||||| ||||||||  |||||| ||| ||||||||||||    ||| ||| || || ||||||||| ||| ||||||||| ||||||||    
T  14344174 tcaattgcaataaaatatctgggaatatcaatacttttgttcaattttttttagagagagtggtcttttagtcgttgtttggccaagaatggtc 14344267  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 41035115 - 41035052
Alignment:
Q  11 tgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||| || |||||||||||    
T  41035115 tgaagccttctagctttaactcagccggaatgaggacccgtgcccaaaaaggctcctccaaagc 41035052  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 50903581 - 50903495
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatata 88  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||||||  |||||||||  ||| |||||||||||| |||| ||||||    
T  50903581 tgaacaaagtgaagcctactagcttcaactcagccgaaatgaggacccgtgcccaaagcggtacctccaaagccgacttggcatata 50903495  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 17114813 - 17114734
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttg 81  Q
    ||||||||||||||||| ||||||||||||| ||| | ||||||||   || |||||||||| |||||||||| ||||||    
T  17114813 tgaacaaagtgaagcctgctagctttaactctgccagaatgaggacccatgtccaaaagggtacctccaaagcggccttg 17114734  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 49491978 - 49491908
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaag 73  Q
    |||||||||||| |||| ||||||| ||||||||||| ||||||||  |||||||||||||| |||||||||    
T  49491978 tgaacaaagtga-gcctactagcttcaactcagccggaatgaggacccgtgcccaaaagggtacctccaaag 49491908  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 19394222 - 19394156
Alignment:
Q  6 caaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaa 72  Q
    |||||||||||||||| ||||||||| ||| || ||||||||  |||||||||||||| ||| ||||    
T  19394222 caaagtgaagccttcttgctttaacttagctggaatgaggacccgtgcccaaaagggtaccttcaaa 19394156  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 39332359 - 39332425
Alignment:
Q  6 caaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaa 72  Q
    ||||||||||||| || |||||||||||||||  ||||||||  |||||||||||||| ||| ||||    
T  39332359 caaagtgaagcctgcttgctttaactcagccgaaatgaggacccgtgcccaaaagggtaccttcaaa 39332425  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 19407942 - 19407866
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgcc 78  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||    
T  19407942 tgaacaaagtgattccttctagctttaactcagccggaatgaggacccgtgcccaaaagggtacctccaaagccgcc 19407866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 7544071 - 7543997
Alignment:
Q  133 acttttgttcaaattt-cagatagggtagtcttttagccgtggtttggccatgaatggtcataatttgtctagtt 206  Q
    |||||||||||||||| || | |||| ||||||||||| || ||||||||  ||||||||||| |||| ||||||    
T  7544071 acttttgttcaaattttcatagagggcagtcttttagctgttgtttggcctagaatggtcatagtttgactagtt 7543997  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 33191303 - 33191369
Alignment:
Q  6 caaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaa 72  Q
    ||||||||||||| |||||||||||||||| |  ||||||||  ||||||| |||||| ||| ||||    
T  33191303 caaagtgaagcctgctagctttaactcagctgacatgaggacccgtgcccagaagggtaccttcaaa 33191369  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 27786887 - 27786804
Alignment:
Q  1 atgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgaca 84  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||| ||||||||||||||  ||||||||    
T  27786887 atgaataaagtgaagccttctagctttaactcagccggaatgaggagccgtgcccaaaatggttcctccaaagctaccttgaca 27786804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36206520 - 36206437
Alignment:
Q  1 atgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgaca 84  Q
    ||||| ||||||||||||||||||||||||| || ||| ||||||||| ||||| ||||| ||||||||||||  |||||||||    
T  36206520 atgaataaagtgaagccttctagctttaacttagtcggaatgaggactcgtgcctaaaagagttcctccaaagttgccttgaca 36206437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8831322 - 8831250
Alignment:
Q  1 atgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaag 73  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||  |||| |||||| ||  ||||||||    
T  8831322 atgaacaaagtgaggcctgctagctttaactcagccggaatgaggacccgtgctcaaaagtgtaactccaaag 8831250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 29369124 - 29369203
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttg 81  Q
    |||| ||||||| |||||| |||||||||| |||| | ||||||||  |||||||||||| | | |||||| ||||||||    
T  29369124 tgaataaagtgatgccttcaagctttaactgagccagaatgaggacccgtgcccaaaaggatacatccaaatccgccttg 29369203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30646384 - 30646453
Alignment:
Q  1 atgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctcca 70  Q
    |||||||||| ||||||| |||| || |||||||| || |||||  || |||||||||||||| ||||||    
T  30646384 atgaacaaagagaagcctgctagtttcaactcagcaggaatgagagctcgtgcccaaaagggtacctcca 30646453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 16893098 - 16893184
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatata 88  Q
    ||||||||||||||||| |||| || ||||||||||| ||||||||  |||| ||||||||| |||||||||| |||||| ||||||    
T  16893098 tgaacaaagtgaagcctactaggttcaactcagccggaatgaggacccgtgctcaaaagggtgcctccaaagctgccttgccatata 16893184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 51524893 - 51524970
Alignment:
Q  7 aaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgaca 84  Q
    ||||||| ||||| |||||||||||||||||| ||||||||  ||||||||||||| |||||||||||  ||||||||    
T  51524893 aaagtgaggccttatagctttaactcagccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgaca 51524970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 255
Target Start/End: Complemental strand, 35526660 - 35526403
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgacatatatagacgaatcggt 101  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||  |||||||||||||| ||  ||||| || |||| || ||  | |  ||| |||    
T  35526660 tgaacaaagtgatgccttctagctttaactcggccggaatgaggacccgtgcccaaaagggtaccaacaaagacgtcttggcagattcaaaataattggt 35526561  T
Q  102 tcaattgcaacaaaatatcgaggaataccaa-acttttgttcaaattt---cagatagggtagtcttttagccgtggtttggccatgaatggtcataatt 197  Q
     ||||||||| | ||||||  |||||   || ||||||||||||||||    ||| || | | |||||||||  | ||| |||||   ||||||||||||    
T  35526560 gcaattgcaatagaatatctgggaatgttaatacttttgttcaaattttcatagagagtgcaatcttttagctattgttgggccaaacatggtcataatt 35526461  T
Q  198 tgtctagttat-tttacaatggttgtttttgacacctctttccttaaggtcatttcctt 255  Q
    || |||||| | | ||||||||||||||||||||||| |||| || ||| |||||||||    
T  35526460 tgactagttttatgtacaatggttgtttttgacacctgtttcatt-aggccatttcctt 35526403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 29346819 - 29346901
Alignment:
Q  2 tgaacaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagccgccttgaca 84  Q
    ||||||| |||| ||||| ||||||||||| |||||| ||||||||  |||| |||||| || ||||||||||||||||||||    
T  29346819 tgaacaacgtgatgccttatagctttaacttagccggaatgaggacccgtgcacaaaagagtacctccaaagccgccttgaca 29346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 29346971 - 29347060
Alignment:
Q  150 agatagggtagtcttttagccgtggtttggccatgaatggtcataatttgtctagttattt-tacaatggttgtttttgacacctctttc 238  Q
    ||| |||| ||||||||||  || ||||||||  ||||||||||| |||| |||||| | | | |||||||||| |||||||||||||||    
T  29346971 agagagggcagtcttttagttgttgtttggcctggaatggtcatagtttgactagttttatgttcaatggttgtatttgacacctctttc 29347060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 10283 - 10352
Alignment:
Q  5 acaaagtgaagccttctagctttaactcagccggtatgaggacttgtgcccaaaagggttcctccaaagc 74  Q
    ||||||||| |||| |||| |||||||||||||| ||||||||  ||||| ||||| ||  |||||||||    
T  10283 acaaagtgaggcctgctagttttaactcagccggaatgaggacccgtgcctaaaagagtaactccaaagc 10352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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