View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_28 (Length: 268)
Name: NF6940_high_28
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 39082414 - 39082179
Alignment:
| Q |
14 |
catcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttcttt |
113 |
Q |
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| T |
39082414 |
catcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttcttt |
39082315 |
T |
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| Q |
114 |
cctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaattatgatgttggtcttttcttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082314 |
cctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaattatgatgttggtcttttcttgt |
39082215 |
T |
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| Q |
214 |
attctaatacatggtccttcagcaatgtgtacattt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39082214 |
attctaatacatggtccttcagcaatgtgtacattt |
39082179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 31727051 - 31726939
Alignment:
| Q |
14 |
catcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttcttt |
113 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
31727051 |
catcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatccgatctttcttt |
31726952 |
T |
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| Q |
114 |
cctaacacgatgg |
126 |
Q |
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||||||||||||| |
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| T |
31726951 |
cctaacacgatgg |
31726939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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