View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_32 (Length: 252)
Name: NF6940_high_32
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_32 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 39083108 - 39082862
Alignment:
| Q |
6 |
atgtcgaagaatatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctt |
105 |
Q |
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| T |
39083108 |
atgtcgaagaagatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctt |
39083009 |
T |
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| Q |
106 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagactactagaatctaatag |
205 |
Q |
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| T |
39083008 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagactactagaatctaatag |
39082909 |
T |
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| Q |
206 |
ctttgcaccaacctacattcaatatttttcctctattacattttatt |
252 |
Q |
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| T |
39082908 |
ctttgcaccaacctacattcaatatttttcctccattacattttatt |
39082862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 31727939 - 31727773
Alignment:
| Q |
6 |
atgtcgaagaatatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctt |
105 |
Q |
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| T |
31727939 |
atgtcgaagaagatgctcccgctccagacggtgtgaaataggcaccattcaatattagatctccttcagatctccagt-ccagttctcccactcaccttt |
31727841 |
T |
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| Q |
106 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatca |
173 |
Q |
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| T |
31727840 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacaaaaaatca |
31727773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 31727752 - 31727668
Alignment:
| Q |
164 |
cataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattcaatatttttcctctattacatttt |
249 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||| |
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| T |
31727752 |
cataaaaccaataagacatggtagactactagaatctaatagctttgcactaaactatatt-aatatttttccactattacatttt |
31727668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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