View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_34 (Length: 242)
Name: NF6940_high_34
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_34 |
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| [»] scaffold0006 (3 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 131076 - 130865
Alignment:
| Q |
17 |
aaaaggaatcacaaacattccctatatttgtcctgttgttgagttcttattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgaga |
116 |
Q |
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| T |
131076 |
aaaaggaatcacaaacattccctatatttgtcctgttgttcagttcttattgtcgcttttagcaggaagttatcattagcaggttctgcacaatgtgaaa |
130977 |
T |
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| Q |
117 |
aagtacaaaagaacatggaagtagtcaatttattgtttttctgaagaagatatatgataaggaaattttgcgtagaggagattgatgcttcccaacggtt |
216 |
Q |
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| T |
130976 |
aagtacaaaagaacatggaactagtcaatttattgtttttctgaagaagatatatgataaggaaattttgcatagaggagattgatgcttcccaacggtt |
130877 |
T |
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| Q |
217 |
caggtgtcagag |
228 |
Q |
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|||||||||||| |
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| T |
130876 |
caggtgtcagag |
130865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 194870 - 194825
Alignment:
| Q |
67 |
tgtcacttttagcaggaagttatcattagaaggttctgcacaatgt |
112 |
Q |
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| T |
194870 |
tgtcacttttagcaggaagttatcattagcaggttctgtacaatgt |
194825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 125370 - 125322
Alignment:
| Q |
64 |
tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgt |
112 |
Q |
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| T |
125370 |
tattgtcacttttagcaggaagttatcattagtaggttttgtacaatgt |
125322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 13602419 - 13602208
Alignment:
| Q |
17 |
aaaaggaatcacaaacattccctatatttgtcctgttgttgagttcttattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgaga |
116 |
Q |
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| T |
13602419 |
aaaaggaatcacaaacattccctatatttgtcctgttgttcagttcttattgtcgcttttagcaggaagttatcattagcaggttctgcacaatgtgaaa |
13602320 |
T |
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| Q |
117 |
aagtacaaaagaacatggaagtagtcaatttattgtttttctgaagaagatatatgataaggaaattttgcgtagaggagattgatgcttcccaacggtt |
216 |
Q |
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| T |
13602319 |
aagtacaaaagaacatggaactagtcaatttattgtttttctgaagaagatatatgataaggaaattttgcatagaggagattgatgcttcccaacggtt |
13602220 |
T |
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| Q |
217 |
caggtgtcagag |
228 |
Q |
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| T |
13602219 |
caggtgtcagag |
13602208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 13487606 - 13487572
Alignment:
| Q |
62 |
cttattgtcacttttagcaggaagttatcattaga |
96 |
Q |
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| T |
13487606 |
cttattgtcacttttaacaggaagttatcattaga |
13487572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 21770196 - 21770132
Alignment:
| Q |
64 |
tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaaga |
128 |
Q |
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| T |
21770196 |
tattctcactattaccaggaagttatcattagcaggttctgtacaatgtaaaaacgtacaaaaga |
21770132 |
T |
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