View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_38 (Length: 229)
Name: NF6940_high_38
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_38 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 4056563 - 4056355
Alignment:
| Q |
6 |
acttttgtaaccgacattttgtgttgaaatagaaaccgagatttgacattaaagttgcttcatagcaaataattctgtaaccgaaaattctgcaaccgaa |
105 |
Q |
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| T |
4056563 |
acttttgtaaccgacattttgtgttgaaatagtaaccgagatttgacattaaagttgcttcatggcaaataattctgtaaccgaaaattctgc------- |
4056471 |
T |
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| Q |
106 |
aattctgccaaactaataatgtagtaaacaatatatatggtattaaacaaatttagaattaaagttctaaatcagtcaaacaaattgtaaccgaaaatat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056470 |
--------caaactaataatgtagtaaacaatatatatggtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatat |
4056379 |
T |
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| Q |
206 |
cttcaaaaataatagtagaagcat |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
4056378 |
cttcaaaaataatagtagaagcat |
4056355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 25067244 - 25067452
Alignment:
| Q |
6 |
acttttgtaaccgacattttgtgttgaaatagaaaccgagatttgacattaaagttgcttcatagcaaataattctgtaaccgaaaattctgcaaccgaa |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
25067244 |
acttttgtaaccgacattttgtgttgaaatagtaaccgagatttgacattaaagttgcttcatggcaaataattctgtaacc---------------gaa |
25067328 |
T |
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| Q |
106 |
aattctgccaaactaataatgtagtaaacaatatatatggtattaaacaaatttagaattaaagttctaaatcagtcaaacaaattgtaaccgaaaatat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067329 |
aattctgccaaactaataatgtagtaaacaatatatatggtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatat |
25067428 |
T |
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| Q |
206 |
cttcaaaaataatagtagaagcat |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
25067429 |
cttcaaaaataatagtagaagcat |
25067452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 795030 - 794822
Alignment:
| Q |
6 |
acttttgtaaccgacattttgtgttgaaatagaaaccgagatttgacattaaagttgcttcatagcaaataattctgtaaccgaaaattctgcaaccgaa |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
795030 |
acttttgtaaccgacattttgtgttgaaatagtaaccgagatttgacattaaagttgcttcatagcaaataattctgtaactgaaaattctgc------- |
794938 |
T |
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| Q |
106 |
aattctgccaaactaataatgtagtaaacaatatatatggtattaaacaaatttagaattaaagttctaaatcagtcaaacaaattgtaaccgaaaatat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
794937 |
--------caaactaataatgtagtaaacaatatatatggtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtagccgaaaatat |
794846 |
T |
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| Q |
206 |
cttcaaaaataatagtagaagcat |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
794845 |
cttcaaaaataatagtagaagcat |
794822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 19194268 - 19194212
Alignment:
| Q |
173 |
taaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19194268 |
taaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcat |
19194212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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