View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_44 (Length: 213)
Name: NF6940_high_44
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 43407895 - 43408090
Alignment:
| Q |
1 |
aatgagagcaaagtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatg |
100 |
Q |
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| T |
43407895 |
aatgagagcaa-gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatg |
43407993 |
T |
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| Q |
101 |
attagaagaagctgaatggacacagaaagaataaaataagggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgatttt |
197 |
Q |
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| T |
43407994 |
attagaagaagctgaatggacacagaaagaataaaataagggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgatttt |
43408090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 43395678 - 43395799
Alignment:
| Q |
13 |
gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgatt---agaaga |
109 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
43395678 |
gtgaaaattaaggaacctacttgatcaaagagggactgtttcattgcagcaagttgtctgcgagaattgtttctgtccatgattgatgattagaagaaga |
43395777 |
T |
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| Q |
110 |
agctgaatggacacagaaagaa |
131 |
Q |
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| T |
43395778 |
agctgaagggacacagaaagaa |
43395799 |
T |
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