View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6940_high_5 (Length: 565)

Name: NF6940_high_5
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6940_high_5
NF6940_high_5
[»] chr8 (3 HSPs)
chr8 (298-555)||(1182077-1182334)
chr8 (18-251)||(1182340-1182573)
chr8 (243-550)||(18194053-18194360)
[»] chr3 (2 HSPs)
chr3 (18-551)||(8169293-8169821)
chr3 (17-550)||(32368953-32369486)
[»] chr1 (2 HSPs)
chr1 (113-550)||(4959015-4959452)
chr1 (17-61)||(4958919-4958963)
[»] chr4 (3 HSPs)
chr4 (17-61)||(26075976-26076020)
chr4 (452-534)||(8190496-8190578)
chr4 (186-247)||(50935197-50935258)
[»] chr2 (1 HSPs)
chr2 (17-82)||(12368312-12368377)
[»] scaffold0105 (1 HSPs)
scaffold0105 (452-534)||(17071-17153)
[»] chr7 (2 HSPs)
chr7 (117-279)||(5242572-5242734)
chr7 (177-229)||(13829332-13829384)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 298 - 555
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
Q  298 tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1182334 tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc 1182235  T
Q  398 taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182234 taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca 1182135  T
Q  498 tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182134 tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg 1182077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 1182573 - 1182340
Alignment:
Q  18 gtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcactttcactcaagttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182573 gtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcactttcactcaagttct 1182474  T
Q  118 gaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatcc 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182473 gaacatacataccatattcaactttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatcc 1182374  T
Q  218 ataaagtgtcttatgcagttcgtataccatatgc 251  Q
    ||||||||||||||||||||||||||||||||||    
T  1182373 ataaagtgtcttatgcagttcgtataccatatgc 1182340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 243 - 550
Target Start/End: Complemental strand, 18194360 - 18194053
Alignment:
Q  243 accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat 342  Q
    ||||||||||||||  |  |||||||||||||||| ||||| |||| ||| ||  | ||||| | | ||||||| |  |||  |||||| ||||||||||    
T  18194360 accatatgctccttcccacttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagactttacatctaaat 18194261  T
Q  343 gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata 442  Q
    |  | | |||||| || ||||||||  | | ||| || ||||||||   | |||||| ||| || ||| | ||||| || |||||||| |||||||||||    
T  18194260 gtgatagtgaccagtttttactgcttgcaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtcaacaccata 18194161  T
Q  443 tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt 542  Q
    |||||| ||||| |||||||||||||  || ||||||| ||| || | ||  ||||| ||||||| ||| ||||||||||| ||||| ||||||||||||    
T  18194160 tctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaatccatttaacatcaatggtt 18194061  T
Q  543 ttcttctt 550  Q
    ||||||||    
T  18194060 ttcttctt 18194053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 18 - 551
Target Start/End: Original strand, 8169293 - 8169821
Alignment:
Q  18 gtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcactttcactcaagttct 117  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| ||||| |||| |||||| |    || |||| |||||||| | |||| | ||||||    
T  8169293 gtgtgtttgaatttctcaatctcactttaattgcttccagttactaatagatcatccacataaa----ta-cattatgatatcagtctcacccgagttct 8169387  T
Q  118 gaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatcc 217  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| || ||||| |||||  |||||||  ||||||||| |||||| ||||| ||| || ||    
T  8169388 gaacatgcataccatactcagctttgcatcttttgaatccaagttgaatcatgaactagtcaattctcttgttccatgctctagaagcctacttaaagcc 8169487  T
Q  218 ataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccattt 317  Q
    ||||||||  ||||| | || ||| |||||||||||| || || | | |||||||| | |||||| ||||||||||| | ||||||| ||||||||||||    
T  8169488 ataaagtgatttatgtaatttgtacaccatatgctcccttcctctgatttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccattt 8169587  T
Q  318 aagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaa 417  Q
    | ||||  |||||| |||||||||||||||||||||||||||||||||||   |||||||| ||||||||||    ||||||  ||||  ||| ||||||    
T  8169588 aggaatgcagactttacatctaaatgaaacaatgaccatttcttactgctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaa 8169687  T
Q  418 acacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttacctt 517  Q
    | ||||||||||| ||||   |||||   || |||||||||||||| ||||| ||||||||||| ||||||| |||| ||| |||||||| ||| || ||    
T  8169688 agacttcattatagtcaatttcatattaatgtaggaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgacttt 8169787  T
Q  518 gaaaattcatttcacatcaatggttttcttcttc 551  Q
    |||||| |||||||||| |||| |||||||||||    
T  8169788 gaaaatccatttcacattaatgtttttcttcttc 8169821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 32368953 - 32369486
Alignment:
Q  17 agtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcactttcactcaagttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||  ||||||  || || |    |||| |||  |||    
T  32368953 agtgtgtttgaacttctcaatctcactttgattacttccagttaccaataggtcatctacatataagcatatcacagttatgttctattcattcagtttc 32369052  T
Q  117 tgaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatc 216  Q
    |||||||| || ||||| |||||||||||| | || || ||||||| ||  | |||||||||||| |  ||||||||| ||||||| |  || ||||| |    
T  32369053 tgaacatatattccatactcagctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgtttgtttcaagc 32369152  T
Q  217 cataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatt 316  Q
    |||||||||  || || |  | ||| |||| |||||||||  |||||||||||||| | || ||||| |||||||| | |  |||||||||| |||||||    
T  32369153 cataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaattcaggtggttgtgtaacatacatatcttcttctaatggtccatt 32369252  T
Q  317 taagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgca 416  Q
     |  |||  |||||| ||||||| |||| | |||||||| ||||| || |   | | ||| || ||||||||   | |||||||| | || ||| | |||    
T  32369253 cagaaatgcagacttaacatctatatgagataatgaccaattcttgctacaggccagtgccaccaccaatcttatagtttctaatttagctactggagca 32369352  T
Q  417 aacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttacct 516  Q
    || || |||||||| ||||||||||||||||  | ||| ||||| || || |  || ||||||| ||| |||| ||   |||| ||||||| ||| || |    
T  32369353 aatacctcattatagtcaacaccatatctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcactt 32369452  T
Q  517 tgaaaattcatttcacatcaatggttttcttctt 550  Q
    ||||||| ||||| ||||||||||||||||||||    
T  32369453 tgaaaatccatttaacatcaatggttttcttctt 32369486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 113 - 550
Target Start/End: Original strand, 4959015 - 4959452
Alignment:
Q  113 gttctgaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttc 212  Q
    |||||| ||||| ||||||||||| ||||||||| |||| |||||||||| ||  | |||||||||||| |  || |||||| |||||||  | || |||    
T  4959015 gttctggacatatataccatattctgctttgcattttttgaatccaatttgaagtaggaactgatcaatcctcttattccatgctctaggtacttgtttc 4959114  T
Q  213 aatccataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtc 312  Q
    || ||||| || |  || || |  | ||| ||||||||||||||| |  ||||||||||| |||| ||||| | || ||| |||  |||||| | | |||    
T  4959115 aagccatagagggctttgtgtaacttgtacaccatatgctcctttccacttacttcaaatactggtggttgtgcaatatacacatcttcttcaagtggtc 4959214  T
Q  313 catttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactag 412  Q
    |||| |  |||  |||||| |||||||||||  | |||||||| || ||||||||  | | ||| || ||||||||   | |||||| ||| || ||| |    
T  4959215 cattcagaaatgcagactttacatctaaatgtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactgg 4959314  T
Q  413 tgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcattttt 512  Q
     ||||| || |||||||| || |||||||||||||| ||||| |||||||| ||||  || ||||||| ||| || | ||  |||||  |||||| |||     
T  4959315 agcaaatacctcattatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttc 4959414  T
Q  513 accttgaaaattcatttcacatcaatggttttcttctt 550  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  4959415 accttgaaaatccatttaacatcaatggttttcttctt 4959452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 4958919 - 4958963
Alignment:
Q  17 agtgtgtttgaacttctcaatctcactttgattacttccagttac 61  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  4958919 agtgtgtttgaacttctcaatctcacttggattacttctagttac 4958963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26076020 - 26075976
Alignment:
Q  17 agtgtgtttgaacttctcaatctcactttgattacttccagttac 61  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  26076020 agtgtgtttgaacttctcaatctcacttggattacttccagttac 26075976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 534
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
Q  452 gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat 534  Q
    ||||||| |||| |||| |||||||||||| ||||||| |||||||| || |||||  || || |||||||| ||||| ||||    
T  8190578 gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat 8190496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 50935258 - 50935197
Alignment:
Q  186 ttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccat 247  Q
    ||||||||| |||||||||||||||| |||||||| | ||  |||||||||| ||| |||||    
T  50935258 ttgttccatgctctaggagcctgctttaatccatataatgctttatgcagtttgtacaccat 50935197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 12368377 - 12368312
Alignment:
Q  17 agtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataa 82  Q
    ||||||||||||||||||||||||| || |||||||||||||||| | ||  ||||| ||||||||    
T  12368377 agtgtgtttgaacttctcaatctcagttggattacttccagttactagtaagtcatttacatataa 12368312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 534
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
Q  452 gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat 534  Q
    ||||||| |||| |||| |||||||||||| ||||||| |||||||| || |||||  || || |||||||| ||||| ||||    
T  17153 gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat 17071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 5242734 - 5242572
Alignment:
Q  117 tgaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatc 216  Q
    |||||||| || ||||| |||||||||||| | ||||| ||||||||||    |||||||||||| |  ||||||||| ||||||  || || ||||| |    
T  5242734 tgaacatatattccatactcagctttgcatttcttaaaaccaatttaaagtgggaactgatcaatcctcttgttccatgctctagatgcttgtttcaagc 5242635  T
Q  217 cataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggag 279  Q
    |||| || |  || || |  | ||| ||||| || |||||| |||||||||||||||| ||||    
T  5242634 catagagagctttgtgtaacttgtacaccatttgatcctttccttttacttcaaatccaggag 5242572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 13829332 - 13829384
Alignment:
Q  177 tcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtctt 229  Q
    ||||||| |||||||||  |||| || ||||||||||||||||| ||||||||    
T  13829332 tcaattcttttgttccaagctcttggtgcctgcttcaatccatatagtgtctt 13829384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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