View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_high_8 (Length: 531)
Name: NF6940_high_8
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 172 - 513
Target Start/End: Original strand, 1676377 - 1676717
Alignment:
| Q |
172 |
aaccagtcagtagtacattacaatttatatgattcaccttttgaatgttgacaacattttggttttattgaagaaaccgactctaatcatgtggggagag |
271 |
Q |
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| T |
1676377 |
aaccagtcagtagtacattacaatttatatgattcaccttttgaatgttgacaacattttggttttattgaagaaaccgactctaatcatgtggggagag |
1676476 |
T |
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| Q |
272 |
caagatcagatattccctctggaattaggagccagattaaaaaggtgagatttcaactcggtggaagttcatgtttctgcttataattttcattgaaaac |
371 |
Q |
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| T |
1676477 |
caagatcagatattccctctggaattaggagccagattaaaaaggtgagatttcaactcgatggaagttcatgtttctgcttataa-tttcattgaaaac |
1676575 |
T |
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| Q |
372 |
gtgcttcgaattaaactagttagcatggacctgttttctctttggagcaggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatg |
471 |
Q |
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| T |
1676576 |
gtgcttcgaattaaactagttagcatggacctgttttctctttggagcaggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatg |
1676675 |
T |
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| Q |
472 |
cattgaacattgaaaagtccaaagaatttgctagacacttga |
513 |
Q |
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| T |
1676676 |
cattgaacattgaaaagtccaaagaatttgctagacacttga |
1676717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 1676224 - 1676355
Alignment:
| Q |
17 |
caaatgcatgtgatgctttccactattagtcaacaaccggtcatgctgcagtaaccaaatgaaattgcgaatctgctccggcacctgcagctgccaaatt |
116 |
Q |
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| T |
1676224 |
caaatgcatgtgatgctttccactattagtctacgaccggtcatgctgcagtaaccaaatgaaattgcgaatctgctccggcacctgcagctgccaaatt |
1676323 |
T |
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| Q |
117 |
ctcgaccacatccttccagtacattgattgat |
148 |
Q |
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| T |
1676324 |
ctcgaccacatccttccagtacattgattgat |
1676355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 26568386 - 26568442
Alignment:
| Q |
419 |
caggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatgcatt |
475 |
Q |
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| T |
26568386 |
caggcatttaggggacaatgctcaaatagtggtgatcaagaatgcagggcatgcatt |
26568442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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