View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_1 (Length: 1005)
Name: NF6940_low_1
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 941; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 19 - 991
Target Start/End: Complemental strand, 42670830 - 42669858
Alignment:
| Q |
19 |
ctttcgaaggccgagttgcatcagctgtagtagcgagtaatgcagcatgtcaataagcaatgctacttccttactatgaaccaaaactgaagacacgtgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42670830 |
ctttcgaaggccgagttgcatcagctgtagtagcgagtaatgcagcatgtcaataagcaatgctacttccttactatgaaccaaaactgaagacacatgc |
42670731 |
T |
|
| Q |
119 |
cactgccgtatagagttgctcttcttcaaatggctttgacacaaagtcatccatcccacattttttgcattcttcatttgatgcttgagttacatcagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670730 |
cactgccgtatagagttgctcttcttcaaatggctttgacacaaagtcatccatcccacattttttgcattcttcatttgatgcttgagttacatcagct |
42670631 |
T |
|
| Q |
219 |
gtcatagctagtattggtatgtgccaataagaaatgttaccaaacatctctgccaattcttccccacaagcaattttttcatttacctcgttctccatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670630 |
gtcatagctagtattggtatgtgccaataagaaatgttaccaaacatctctgccaattcttccccacaagcaattttttcatttacctcgttctccatat |
42670531 |
T |
|
| Q |
319 |
accggattcgcctagtcacctcaaaactgcaacatgtaagaagaaaatacttgtaaattatacttgcatacaaaagtcaaaaacaaactaaacagatgag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670530 |
accggattcgcctagtcacctcaaaactgcaacatgtaagaagaaaatacttgtaaattatacttgcatacaaaagtcaaaaacaaactaaacagatgag |
42670431 |
T |
|
| Q |
419 |
gaatatgcagattaatcacccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagcaccttaagtgcagcctta |
518 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42670430 |
gaatatgcagattaattacccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagcaccttaagagcagcctta |
42670331 |
T |
|
| Q |
519 |
ccaccatccacacaggtaactactgctccatattttcgcagaacaccttctgcaacttttctgttcactgcgttatcatcaaccaccaaaattcgtttgt |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670330 |
ccaccatccacacaggtaactactgctccatattttcgcagaacaccttctgcaacttttctgttcactgcgttatcatcaaccaccaaaattcgtttgt |
42670231 |
T |
|
| Q |
619 |
gtatcaataaattttcaagttgggatactttctttctgtctatttgttttctcccagttccaagggattctctgtagtagcgaatcaaaacactttgcca |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670230 |
gtatcaataaattttcaagttgggatactttctttctgtctatttgttttctcccagttccaagggattctctgtagtagcgaatcaaaacactttgcca |
42670131 |
T |
|
| Q |
719 |
aagaggcttcattagtacatcatctatgataccaactgactttagctcctttcgctcattggggctaaggtgggtggccaggagaaaaatctttggaaag |
818 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670130 |
aagaggcttcattagtacatcatctatgataccaactgactttagctcctttcgctcgttggggctaaggtgggtggccaggagaaaaatctttggaaag |
42670031 |
T |
|
| Q |
819 |
tttagcgagtcccctttgacgccattctgtccttgtttcttgattgcgtataagatgctactttccttgtcccatgaatccttgtctataagaatcatgg |
918 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670030 |
tttagcgagtcccctttgacgccattctgtccttgtttcttgattgcgtataagatgctactttccttgtcccatgaatccttgtctataagaatcatgg |
42669931 |
T |
|
| Q |
919 |
ccaattgtgtcggcatactgaaagaatggaaacaaaagcaataattagtaaatattataataacctgatgtcc |
991 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
42669930 |
ccaattgtgtcagcatactgaaagaacggaaacaaaagcaataattagtaaatattttaataacctaatgtcc |
42669858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 487
Target Start/End: Original strand, 19388370 - 19388421
Alignment:
| Q |
436 |
acccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatg |
487 |
Q |
| |
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|||| ||||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
19388370 |
acccatccatttctggcatttgaatgtccatgaagcaagcatcaaatttatg |
19388421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 44819113 - 44819158
Alignment:
| Q |
436 |
acccgtccatttctggcatttggagatccatgaagcaagcatcaaa |
481 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
44819113 |
acccgtccatttctggcatttgaatatccatgaagcaagcatcaaa |
44819158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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