View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_14 (Length: 431)
Name: NF6940_low_14
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 3724157 - 3724569
Alignment:
| Q |
19 |
gtattgatccctataacaatgaaacattttttccttggagttgattcaactctctctagttttcctgatgcagaaatattgaccataaatacaggcatga |
118 |
Q |
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| T |
3724157 |
gtattgatccctataacaatgaaacattttttccttggagttgattcaactctctctagttttcctgatgcagaactattgaccataaatacaggcatga |
3724256 |
T |
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| Q |
119 |
gccatcaaagcaaatttaagattcaactccaaagaagatagtcttactcgaattcctgcagtttatgtacaataatggttttagaattagcgttatttga |
218 |
Q |
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| T |
3724257 |
gccatcaaagcaaatttaagattcaactccagagaagatagtcttactcgaattcctgcagtttatgtacaataatggttttagaattagcgttatttga |
3724356 |
T |
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| Q |
219 |
tacaaatagaaatagattcaatgcaaacaaccattggtatggcttacttgacaacattatgggtatttaacacttccactttactgtaattggagctagg |
318 |
Q |
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| T |
3724357 |
tacaaatagaaatagattcaatgcaaacaaccattggtatggcttacttgacaacattctgggtagttaacacttccactttactgtaattggagctagg |
3724456 |
T |
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| Q |
319 |
ctttacaacctttggagcaacggaagaaacatagcgaaaaacatgtcatgaccacattagtaaataacaaaagatgtagttactagttatatgcctgaaa |
418 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | |
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| T |
3724457 |
ctttacaacctttggagcaacgaaagaaacatagagaaaaaaatgtcatgaccacatttgtaaataacaaaagatgtagttaatagttatatgcttgaca |
3724556 |
T |
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| Q |
419 |
acgtaagaactaa |
431 |
Q |
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| T |
3724557 |
gcttaagaactaa |
3724569 |
T |
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