View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_16 (Length: 386)
Name: NF6940_low_16
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 34797241 - 34797598
Alignment:
| Q |
18 |
aagcatgcctgaacatctggtggacgcgtgtaagaggtgtgctcgagcatttataagggctgaatttcaggtatgctttgttccacctataactattcag |
117 |
Q |
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| T |
34797241 |
aagcatgcctgaacatctagtggacgcgtgtaagaggtgtgctcgagcatttataagggccgaatttcaggtatgctttgttccacctataactattcag |
34797340 |
T |
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| Q |
118 |
gcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactagattaaatgaatgctttgattttatatcaatta |
217 |
Q |
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| T |
34797341 |
gcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactatattaaatgaatgctttgattttatatcaatta |
34797440 |
T |
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| Q |
218 |
taagatagaaggtgatgctatcnnnnnnntttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagnnnnnnnnccata |
317 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34797441 |
taagatagaaggtgatgctcacaaaaaaatttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagaaaaaaaaccata |
34797540 |
T |
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| Q |
318 |
ggttatgtatttattgcacctataaactgaggaagggagaaaaagcataattgttctt |
375 |
Q |
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| T |
34797541 |
ggttatgtatttattgcacctataaactgaggaagggagaaaaagcataattgttctt |
34797598 |
T |
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