View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_18 (Length: 369)
Name: NF6940_low_18
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 107 - 355
Target Start/End: Complemental strand, 33557449 - 33557204
Alignment:
| Q |
107 |
ctgcatgtcattgataattattgctcctactgtaataatcaaacaatttggttcttatcatcattcctttgtgttaacctttttgaagtgtttggcatgg |
206 |
Q |
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| T |
33557449 |
ctgcatgtcattgataattattgctcctactgtaat---caaacaatttggttcttatcatcattcctttgtgttaacctttttgaagtgtttggcatgg |
33557353 |
T |
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| Q |
207 |
ttggaaaatcatatttatgagaaaagttacctattaactaaactttgttctccattgcccttttaactccacaacaaaacccctaggacaatggcggttt |
306 |
Q |
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| T |
33557352 |
ttggaaaatcatatttatgagaaaagttacctattaactaaactttgttctccattgccctcttaactaagcaacaaaacccctaggacaatggcggttt |
33557253 |
T |
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| Q |
307 |
gatttctataagcagcccttaaaagaaatccattatagatcacatttct |
355 |
Q |
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| T |
33557252 |
gatttctataagcagcccttaaaataaatccattatagatcacatttct |
33557204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 41179672 - 41179737
Alignment:
| Q |
153 |
tttggttcttatcatcattcctttgtgttaacctttt-tgaagtgtttggcatggttggaaaatca |
217 |
Q |
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| T |
41179672 |
tttgtttcttgtcatcattcctttgtgataatcttttttgaagtgtttggcatggttggaaaatca |
41179737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 34205953 - 34205878
Alignment:
| Q |
142 |
taatcaaacaatttggttcttatcatcattcctttgtgttaacctttttgaagtgtttggcatggttggaaaatca |
217 |
Q |
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| T |
34205953 |
taatcaaataattgggttcttatcatcattcctctgtggtattttttttgaagtgtttggcatggttgcaaaatca |
34205878 |
T |
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