View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6940_low_19 (Length: 368)
Name: NF6940_low_19
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 25527367 - 25527029
Alignment:
| Q |
18 |
cataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaatttggataaggctaatgagtttattgatgagcttaagataaggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527367 |
cataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaatttggataaggctaatgagtttattgatgagcttaagataaggt |
25527268 |
T |
|
| Q |
118 |
gtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527267 |
gtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttatt |
25527168 |
T |
|
| Q |
218 |
gaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527167 |
gaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgac |
25527068 |
T |
|
| Q |
318 |
atgttagacaatcacacgccttccacttttcatgatgtc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25527067 |
atgttagacaatcacacgccttccacttttcatggtgtc |
25527029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 62 - 356
Target Start/End: Complemental strand, 25535355 - 25535061
Alignment:
| Q |
62 |
tcaactgggaaatttggataaggctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaat |
161 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| |||||||||||||||||| ||||||| |||| || ||| | |||||||| |||||| || || |
|
|
| T |
25535355 |
tcaactgggaaatgttgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacat |
25535256 |
T |
|
| Q |
162 |
tggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctct |
261 |
Q |
| |
|
|||||| || |||||| |||||||||||| || |||||||||||||| || ||||||||||||||||||| |||||||||| ||||| || || | |||| |
|
|
| T |
25535255 |
tggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctct |
25535156 |
T |
|
| Q |
262 |
tggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtc |
356 |
Q |
| |
|
||||| ||||||||| || |||||| ||||| |||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||| |||| |
|
|
| T |
25535155 |
tggagattttgctcaggtttggaaaaaaaaccgaggcttgggacttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtc |
25535061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 351
Target Start/End: Original strand, 25515099 - 25515382
Alignment:
| Q |
71 |
aaatttggataaggctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttctt |
170 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||| ||||||| |||| || | || ||||||||||||||||| ||| | |||| || |
|
|
| T |
25515099 |
aaattttgataaggctaatgagcttattgatgaccttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatatgcagtggtgcttt |
25515198 |
T |
|
| Q |
171 |
aagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatg---agacctgaaactggcgatgttctcttggagg |
267 |
Q |
| |
|
||| ||||||| ||||| || |||||||||||||| || ||||||||||||||||||| |||| |||||||||||| || || |||||||| || |
|
|
| T |
25515199 |
gtacaaagaagagagaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacgg |
25515298 |
T |
|
| Q |
268 |
ttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatg |
351 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
25515299 |
ttttgctctcgtctggaaaaaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacacctcccacttttcatg |
25515382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 274
Target Start/End: Complemental strand, 25538274 - 25538136
Alignment:
| Q |
136 |
gtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggat |
235 |
Q |
| |
|
||||||||| |||||| | |||| | |||||| ||||| | |||||||| ||||| |||||||||| |||| | || |||||||||| ||||| |||||| |
|
|
| T |
25538274 |
gtgttgtgaatgccacattcatggaatggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggat |
25538175 |
T |
|
| Q |
236 |
gagacctgaaactggcgatgttctcttggaggttttgct |
274 |
Q |
| |
|
||||||||||||| || ||| ||| |||||||| ||||| |
|
|
| T |
25538174 |
gagacctgaaacttgcaatgctcttttggaggtgttgct |
25538136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 334
Target Start/End: Original strand, 43223700 - 43223959
Alignment:
| Q |
72 |
aatttggataaggctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttctta |
171 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||| ||| | ||||||||| | ||| ||||||||| | |||||| ||| |
|
|
| T |
43223700 |
aatttggataaggctaatgagctttttgatgagcttaagggaaggtgtagtgtttatga---tggtgttgtaaatgctacttacatggaatggtttttta |
43223796 |
T |
|
| Q |
172 |
agcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggtttt |
271 |
Q |
| |
|
|||| |||||||||||||| || ||||| | ||||||||||| || | ||| ||| |||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
43223797 |
agcagggaagagataaggaggctatggattcgtataagtctttcatggatcgcgagtttaggatgacacctgcaacttgtaatgttctgttggaggtttt |
43223896 |
T |
|
| Q |
272 |
gctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacac |
334 |
Q |
| |
|
||| ||| ||| ||||||| ||||||||| | |||||| || | ||||| || |||||||| |
|
|
| T |
43223897 |
gcttaagcatgataagaaaaaggaggcttggaaattgtttgatcagatgttggataatcacac |
43223959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University