View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6940_low_20 (Length: 360)
Name: NF6940_low_20
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 6729529 - 6729294
Alignment:
| Q |
6 |
cagaacctgtgcttgaaccagtccttactcctatatccaacaccacactacctctaacccacacaaactcatcacctttcactggatctgcaacaacccc |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
6729529 |
cagaacctgtgcttgaaccaatccttactcctatatccaacaccacactacctctaacccacacaaactcatcacccttcactagatctgcaacaacccc |
6729430 |
T |
|
| Q |
106 |
attctctacctcaacaaattttattcctttctctacactgttatcacttcatcacactaccccccttaccgtacctctttcgcaaacccaaacctatggc |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6729429 |
attctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacactaccccccttaccgtacctctttcacaaacccaaacctatggc |
6729330 |
T |
|
| Q |
206 |
tatttcactcagccgattgttaacacatcgatctat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6729329 |
tatttcactcagccgattgttaacacatcgatctat |
6729294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 6729282 - 6729199
Alignment:
| Q |
271 |
tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccata |
354 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6729282 |
tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccata |
6729199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University