View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_21 (Length: 349)
Name: NF6940_low_21
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 26 - 327
Target Start/End: Complemental strand, 14861950 - 14861650
Alignment:
| Q |
26 |
gtgggtgttgaggttgggtgccatatcggcaggatggttagattcgatgaggataacaactatcgcccttggagacgacagtaaacaatcgagatttgat |
125 |
Q |
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| T |
14861950 |
gtgggtgttgaggttgggtgccatatcggtaggatggttagattcgatgaggataacaactatcgcccttggagacgacagtaaacaatcgagatttgat |
14861851 |
T |
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| Q |
126 |
caagtgtgagaatatcttacataatacaaacaccagttgttgtttagcttaaaccctaaaaaacaaaagttgaatctccgaacatactttagtacaaatg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14861850 |
caagtgtgagaatatcttacataatacaaacaccagttgttgtttagctt-aaccctaaaaaacaaaagttgaatctccgaacatactttagtacaaatg |
14861752 |
T |
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| Q |
226 |
ctgaagattacttagtacaagttgttgttatnnnnnnntacacaaacaaaattaatagattgcaatcgacaatgaatggtgtattcatttagtagcataa |
325 |
Q |
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||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14861751 |
ctgaatattacttagtacaggttgttgttataaaaaaatacacaaacaaaattaatagattgcaatcgacaatgaatggtgtattcatttagtagcataa |
14861652 |
T |
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| Q |
326 |
ta |
327 |
Q |
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|| |
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| T |
14861651 |
ta |
14861650 |
T |
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