View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_22 (Length: 337)
Name: NF6940_low_22
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 27056230 - 27056534
Alignment:
| Q |
21 |
ttcactccaaatgtactataaaaacaaacccaagactcaatgctaaggcatatgcatgaaaatgcaagtgcataataattttaatctccccatttggcac |
120 |
Q |
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| T |
27056230 |
ttcactccaaatgtactataaaaacaaacacaagactcaatgctaaggcatatgcatgaaaatgcaagtgcataataattttaatctctccatttggcac |
27056329 |
T |
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| Q |
121 |
ttaataatacattgaatcatctcatttgccacttaataattcattgattcgttcccaaaatgccacatatgaggtgcctacgaacaatctccctacatcc |
220 |
Q |
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| T |
27056330 |
ttaataatacattgaatcgtctcatttgccacttaataattcattgattcgttcccaaaatgtcatagatgaggtgcctacgaacaatctccctacatcc |
27056429 |
T |
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| Q |
221 |
acaaatcccgtttttgaacatgttgaccaacaaaagcattcaaagttcgttgaggttccggttccagttccagttgatcagacacaagagcgagttctta |
320 |
Q |
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| T |
27056430 |
acaaatcccgtttttgaacatgttgaccaacaaaagcattcaaagttcgttga------ggttccagttccagttgatcagacacaagagcgggttctta |
27056523 |
T |
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| Q |
321 |
atgatgatgtc |
331 |
Q |
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| T |
27056524 |
atgatgatgtc |
27056534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 18926592 - 18926628
Alignment:
| Q |
26 |
tccaaatgtactataaaaacaaacccaagactcaatg |
62 |
Q |
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| T |
18926592 |
tccaaatgtactataaaaacaaacataagactcaatg |
18926628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 24302641 - 24302698
Alignment:
| Q |
110 |
ccatttggcacttaataatacattgaatcatctcatttgccacttaataattcattga |
167 |
Q |
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| T |
24302641 |
ccatttggcacttaaaaattcattgaatcgcctcatttgacacttaaaaatccattga |
24302698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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