View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_27 (Length: 289)
Name: NF6940_low_27
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 38137564 - 38137835
Alignment:
| Q |
13 |
aatatttgtcatgtcgcgtatattccaatgtggcacctcccaaatccctcctagaatcatcctttccatttcttcttacaagacttttgtgctacacaca |
112 |
Q |
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| T |
38137564 |
aatatttttcatgtcgcgtatattccaatgtggcacctcccaaatccctcctagaatcatcctttccatttcttcttacaagacttttgtgctacacaca |
38137663 |
T |
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| Q |
113 |
tatgttaactaaacattaagttcatgtaacatcctgcaccaaaataaataaatcatgcaacgtcttttatattggtgatcaataatatttgataaatact |
212 |
Q |
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| T |
38137664 |
tatgttaaccaaacattaagttcatgtaacatcctgcaccaaaataaataaatcatgcaacgtcttttatattggtgatcaataatatttgataaatact |
38137763 |
T |
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| Q |
213 |
tcnnnnnnntaatatttgataaataaattccttcttataagtatttttatggcaattggcatacatcattct |
284 |
Q |
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| T |
38137764 |
tcaaaaaaataatatttgataaataaattccttcttataagtatttttatggcaattggcatacatcattct |
38137835 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 5555436 - 5555535
Alignment:
| Q |
25 |
gtcgcgtatattccaatgtggcacctcccaaatccctcctagaatcatcctttcca-------tttcttcttacaagacttttgtgctacacacatatgt |
117 |
Q |
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| T |
5555436 |
gtcgcatatattccaatgcggcacctccaaaattcctcctagaatcctcctttctattttttttttcttcttacaagtcttttgtgcaacacaaatatgt |
5555535 |
T |
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