View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_28 (Length: 285)
Name: NF6940_low_28
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 7081813 - 7081553
Alignment:
| Q |
18 |
atatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttaca |
117 |
Q |
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| T |
7081813 |
atatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttaca |
7081714 |
T |
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| Q |
118 |
ctctcctcagtttcttacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081713 |
ctctcctcagtttcttacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaaca |
7081614 |
T |
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| Q |
218 |
ctatcccttcaaatctttgcttcagaaaagcttccatcatgccttcaaaatcttcatctca |
278 |
Q |
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| T |
7081613 |
ctatcccttcaaatctttgcttcagaaaagcttccatcatgccttcaaaatcttcatctca |
7081553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 49020101 - 49020237
Alignment:
| Q |
133 |
tacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatc |
232 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||| ||||| | || |||||| |||||||||||||||||| |
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| T |
49020101 |
tacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaagcttcaatgacgaagtaacctatttagaagacactatcccttcaaatc |
49020200 |
T |
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| Q |
233 |
tttgcttcagaaaagcttccatcatgccttcaaaatc |
269 |
Q |
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| T |
49020201 |
tttgccatagaaaagcttccatcatgccctctaaatc |
49020237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 49019990 - 49020045
Alignment:
| Q |
19 |
tatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatccat |
74 |
Q |
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|||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |
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| T |
49019990 |
tatccaactaagatcataatcaaaacatgtggaacaacccaacttctcaaatccat |
49020045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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