View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6940_low_29 (Length: 270)

Name: NF6940_low_29
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6940_low_29
NF6940_low_29
[»] chr6 (18 HSPs)
chr6 (71-270)||(14623166-14623365)
chr6 (73-270)||(14589508-14589705)
chr6 (103-229)||(33123017-33123143)
chr6 (102-225)||(26388201-26388324)
chr6 (102-206)||(29938623-29938726)
chr6 (106-224)||(7632781-7632899)
chr6 (103-221)||(3989524-3989642)
chr6 (109-224)||(3989524-3989639)
chr6 (101-229)||(7632776-7632904)
chr6 (106-224)||(14623212-14623330)
chr6 (106-224)||(33123022-33123140)
chr6 (115-224)||(29938627-29938735)
chr6 (90-150)||(10405046-10405106)
chr6 (106-229)||(26388202-26388325)
chr6 (106-224)||(14589554-14589672)
chr6 (16-45)||(14623397-14623426)
chr6 (101-150)||(23767941-23767990)
chr6 (102-146)||(30629598-30629642)
[»] chr4 (35 HSPs)
chr4 (102-229)||(22720512-22720639)
chr4 (102-229)||(52673604-52673731)
chr4 (102-229)||(22720513-22720640)
chr4 (102-229)||(22768150-22768277)
chr4 (89-229)||(52673592-52673732)
chr4 (104-214)||(41622106-41622216)
chr4 (102-221)||(22768151-22768270)
chr4 (102-229)||(49083049-49083171)
chr4 (172-229)||(2198054-2198111)
chr4 (102-150)||(2198055-2198103)
chr4 (102-229)||(44626168-44626293)
chr4 (102-229)||(49083048-49083170)
chr4 (101-214)||(6464885-6464998)
chr4 (102-150)||(22923666-22923714)
chr4 (102-150)||(22928319-22928367)
chr4 (102-150)||(22984598-22984646)
chr4 (102-150)||(22998186-22998234)
chr4 (108-204)||(41622128-41622224)
chr4 (101-150)||(15794769-15794819)
chr4 (101-150)||(2198121-2198169)
chr4 (176-229)||(22923665-22923718)
chr4 (176-229)||(22928318-22928371)
chr4 (176-229)||(22984597-22984650)
chr4 (176-229)||(22998185-22998238)
chr4 (177-218)||(2198118-2198159)
chr4 (102-139)||(5281231-5281268)
chr4 (175-228)||(6464886-6464939)
chr4 (101-150)||(39396827-39396876)
chr4 (96-145)||(39897110-39897159)
chr4 (102-143)||(44156092-44156133)
chr4 (90-139)||(50485791-50485840)
chr4 (176-229)||(52299084-52299136)
chr4 (101-149)||(6131436-6131484)
chr4 (157-224)||(15794774-15794842)
chr4 (89-145)||(22020110-22020166)
[»] chr5 (18 HSPs)
chr5 (103-229)||(26221030-26221156)
chr5 (102-225)||(21032539-21032662)
chr5 (102-222)||(42364233-42364353)
chr5 (101-224)||(29486504-29486627)
chr5 (102-204)||(5240233-5240335)
chr5 (124-231)||(21032536-21032643)
chr5 (101-224)||(29486509-29486632)
chr5 (101-229)||(7604194-7604323)
chr5 (102-229)||(42364227-42364354)
chr5 (106-221)||(26221035-26221150)
chr5 (126-229)||(5240232-5240335)
chr5 (104-150)||(892560-892606)
chr5 (176-224)||(892562-892610)
chr5 (106-150)||(6834041-6834085)
chr5 (176-230)||(6834035-6834089)
chr5 (101-139)||(35969225-35969263)
chr5 (101-145)||(1098634-1098678)
chr5 (101-145)||(36864512-36864556)
[»] chr8 (13 HSPs)
chr8 (102-229)||(6197832-6197959)
chr8 (116-229)||(13325116-13325225)
chr8 (106-229)||(6197837-6197960)
chr8 (102-228)||(27938998-27939124)
chr8 (101-224)||(11322569-11322690)
chr8 (106-214)||(13325116-13325220)
chr8 (101-208)||(11322589-11322695)
chr8 (176-218)||(158444-158486)
chr8 (116-150)||(158448-158482)
chr8 (104-150)||(1214021-1214067)
chr8 (176-229)||(43140629-43140681)
chr8 (176-224)||(28205809-28205857)
chr8 (102-150)||(43140553-43140601)
[»] chr7 (25 HSPs)
chr7 (106-229)||(4132392-4132516)
chr7 (106-229)||(4132397-4132521)
chr7 (87-224)||(38646177-38646315)
chr7 (87-229)||(41115556-41115698)
chr7 (102-150)||(26982771-26982819)
chr7 (176-229)||(26982770-26982823)
chr7 (173-230)||(43250417-43250474)
chr7 (89-150)||(45578005-45578066)
chr7 (102-150)||(43250424-43250472)
chr7 (104-150)||(38646175-38646221)
chr7 (102-144)||(43250376-43250418)
chr7 (102-150)||(21857076-21857124)
chr7 (174-230)||(45578016-45578072)
chr7 (186-229)||(43250375-43250418)
chr7 (183-229)||(38646255-38646301)
chr7 (176-229)||(21587841-21587894)
chr7 (176-229)||(21857075-21857128)
chr7 (101-150)||(24155642-24155691)
chr7 (176-229)||(34840620-34840673)
chr7 (107-224)||(41115562-41115679)
chr7 (102-150)||(21587842-21587890)
chr7 (102-150)||(21857171-21857219)
chr7 (101-145)||(30457820-30457864)
chr7 (161-221)||(34703509-34703569)
chr7 (161-221)||(40416972-40417032)
[»] chr1 (13 HSPs)
chr1 (89-229)||(8352129-8352269)
chr1 (106-229)||(8352141-8352264)
chr1 (110-240)||(26468289-26468419)
chr1 (109-223)||(31635757-31635871)
chr1 (137-224)||(14773765-14773852)
chr1 (102-221)||(31635752-31635871)
chr1 (106-224)||(43731130-43731248)
chr1 (102-220)||(26468301-26468419)
chr1 (104-226)||(43731128-43731250)
chr1 (102-170)||(30800186-30800254)
chr1 (126-204)||(897042-897120)
chr1 (101-150)||(39940571-39940620)
chr1 (101-145)||(10256787-10256831)
[»] chr2 (13 HSPs)
chr2 (134-229)||(8996792-8996887)
chr2 (101-204)||(8717540-8717643)
chr2 (102-231)||(20218550-20218679)
chr2 (102-150)||(10495729-10495777)
chr2 (102-150)||(43100756-43100804)
chr2 (176-243)||(10495725-10495792)
chr2 (101-163)||(8996729-8996791)
chr2 (102-196)||(8996792-8996886)
chr2 (102-226)||(13953774-13953899)
chr2 (102-226)||(14094981-14095106)
chr2 (119-194)||(39792136-39792211)
chr2 (183-229)||(43100755-43100801)
chr2 (176-224)||(8996734-8996782)
[»] chr3 (12 HSPs)
chr3 (102-224)||(50334932-50335053)
chr3 (124-229)||(35239682-35239787)
chr3 (104-206)||(29497369-29497471)
chr3 (106-229)||(50334932-50335054)
chr3 (122-220)||(32711221-32711319)
chr3 (124-224)||(29497371-29497471)
chr3 (102-206)||(35239682-35239786)
chr3 (97-228)||(53711868-53711998)
chr3 (105-139)||(42912351-42912385)
chr3 (191-224)||(42912352-42912385)
chr3 (101-150)||(53711867-53711916)
chr3 (124-204)||(48593175-48593255)
[»] scaffold0155 (1 HSPs)
scaffold0155 (191-229)||(33971-34009)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 71 - 270
Target Start/End: Complemental strand, 14623365 - 14623166
Alignment:
Q  71 ctgttgaaagggaaacatatactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaag 170  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  14623365 ctgttgaaagggaaacatatactccctctcatcactattataaataaaacttcactttttagatacattgaaaaattaatctgttcagtctataataaag 14623266  T
Q  171 gctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgactgaatgtagtatatgaaatatgcttaattgtcggaatgaac 270  Q
      || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  14623265 attagatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgaccgaatgaagtatatgaaatatgtttaattgtcggaatgaac 14623166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 73 - 270
Target Start/End: Complemental strand, 14589705 - 14589508
Alignment:
Q  73 gttgaaagggaaacatatactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggc 172  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |    
T  14589705 gttgaaagggaaacctatactccctctcatcactattataaataaaactttactttttagatacattgaataatcaatctgtccggtctataataaagac 14589606  T
Q  173 tatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgactgaatgtagtatatgaaatatgcttaattgtcggaatgaac 270  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  14589605 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatatgaaatatgcttaattgtcggaatgaac 14589508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 33123143 - 33123017
Alignment:
Q  103 cactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaa 202  Q
    |||||||||||| |||| || |||||||||||||| | |||||||||  | || ||||||||| |||| ||| |||||| ||||||||||||||| | ||    
T  33123143 cactattataagcaaaagtttactttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaa 33123044  T
Q  203 aagtgaagttttgcttataataatgac 229  Q
    ||||||||||||| |||||||||||||    
T  33123043 aagtgaagttttgtttataataatgac 33123017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 26388324 - 26388201
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||||| ||||||||| ||| |||||||||||||| | | |||||||||||||||  || |||||| ||||||||||| ||||| |    
T  26388324 tcactattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattattcaatatatctaa 26388225  T
Q  202 aaagtgaagttttgcttataataa 225  Q
    |||||  ||||||| |||||||||    
T  26388224 aaagtagagttttgtttataataa 26388201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 29938623 - 29938726
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| | || ||| || ||||||| ||| |||||| ||||||||||||||||| |    
T  29938623 tcactattataagtaaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaa 29938721  T
Q  202 aaagt 206  Q
    |||||    
T  29938722 aaagt 29938726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 7632899 - 7632781
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||  ||||||| |||||||||||||| |||||||||||| | ||| ||||||||||||| ||| ||||||  |||||| ||||||  |  ||||    
T  7632899 tattataaacaaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattattgaatgtagttagaaag 7632800  T
Q  206 tgaagttttgcttataata 224  Q
    |||||||||| ||||||||    
T  7632799 tgaagttttgtttataata 7632781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 3989642 - 3989524
Alignment:
Q  103 cactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaa 202  Q
    |||||||||||  ||||||| ||| || ||||||||||||||||| || | || |||||||||||||| ||| | ||||  ||||||  |||||| | ||    
T  3989642 cactattataatcaaaacttaactattaagatacattgaataattgatgtatctagtctataataaagactagaaacattgattattttatgtatttaaa 3989543  T
Q  203 aagtgaagttttgcttata 221  Q
    |||||||||||||||||||    
T  3989542 aagtgaagttttgcttata 3989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 3989524 - 3989639
Alignment:
Q  109 tataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtga 208  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| | || ||||| || || || ||| |||||| ||||||||||||||||| || ||| |    
T  3989524 tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagtta 3989623  T
Q  209 agttttgcttataata 224  Q
    ||||||| ||||||||    
T  3989624 agttttgattataata 3989639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 7632776 - 7632904
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    |||||||||||||  ||||||||||||| ||  |||||| |||||| ||| | || ||||| || || || |   |||||| ||||||||| |||||||     
T  7632776 atcactattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatcta 7632875  T
Q  201 aaaagtgaagttttgcttataataatgac 229  Q
    |||||| |||||||| |||||||||||||    
T  7632876 aaaagttaagttttgtttataataatgac 7632904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 14623212 - 14623330
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || | || | ||| || || || ||  | | || |||| |||||||||||| |||||    
T  14623212 tattataagcaaaacttcacttttcagatacattgaataattcatgtatctaatctttattatagactgaacagattaatttttcaatgtatctaaaaag 14623311  T
Q  206 tgaagttttgcttataata 224  Q
    |||||||||  ||||||||    
T  14623312 tgaagttttatttataata 14623330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 33123022 - 33123140
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||  |||||||||||||||| |||||||||||||||||| | || ||||| |  || || ||  |||| | ||||||| | ||||||| |||||    
T  33123022 tattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatctaaaaag 33123121  T
Q  206 tgaagttttgcttataata 224  Q
    | || ||||||||||||||    
T  33123122 taaacttttgcttataata 33123140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 29938735 - 29938627
Alignment:
Q  115 taaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagtttt 214  Q
    |||||||  ||||||||||||||||||||||||||| | || ||||| || |  |  ||| |||||| ||||||| ||||||||| ||||||||| ||||    
T  29938735 taaaactctactttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaatttt 29938637  T
Q  215 gcttataata 224  Q
     |||||||||    
T  29938636 acttataata 29938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 10405046 - 10405106
Alignment:
Q  90 tactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||| |||| ||||||||||||| |||||||||| |||||| ||||||| ||||||||||    
T  10405046 tactctctctgatcactattataaataaaacttcattttttaaatacattaaataattaat 10405106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 26388202 - 26388325
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||  ||||||  |||||||||||| |||||||||||||| | || | ||| || || || ||  |||||| ||||||||||| ||| | |||||    
T  26388202 tattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaag 26388301  T
Q  206 tgaagttttgcttataataatgac 229  Q
    || |||||| ||||||||| ||||    
T  26388302 tggagtttttcttataatagtgac 26388325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 14589554 - 14589672
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||  |||||||||||||| ||||||||||||||||| || | || ||||| || || || |   | | ||  |||||||||||||||| |||||    
T  14589554 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaaaaag 14589653  T
Q  206 tgaagttttgcttataata 224  Q
    | |||||||  ||||||||    
T  14589654 taaagttttatttataata 14589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 14623426 - 14623397
Alignment:
Q  16 catcaacatcacatggattattattgcaat 45  Q
    ||||||||||||||||||||||||||||||    
T  14623426 catcaacatcacatggattattattgcaat 14623397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 23767941 - 23767990
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||| |||||||||||||| |||| ||||| |||||||| ||||||||||    
T  23767941 atcaatattataagtaaaatttcagtttttcgatacattaaataattaat 23767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 30629598 - 30629642
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataat 146  Q
    ||||||||||||  |||| ||||||||||||||| ||||||||||    
T  30629598 tcactattataaacaaaatttcactttttagatagattgaataat 30629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 22720639 - 22720512
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||||| ||||||||||||||||| |    
T  22720639 tcactattataagcaaaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatctaa 22720540  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    |||||| | ||||| |||||||| ||||    
T  22720539 aaagtggaattttgtttataatagtgac 22720512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 52673731 - 52673604
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||  ||||||||||  ||| |||||| ||||||||||| ||||| |    
T  52673731 tcactattataagcaaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaattattcaatatatctaa 52673632  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    ||||| ||||||||||||||||| ||||    
T  52673631 aaagtaaagttttgcttataatagtgac 52673604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 22720513 - 22720640
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||  |||| | |||||||||||||||||||||||||||| | || ||||| || || || ||  |||||| ||||||||||||||||| |    
T  22720513 tcactattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatctaa 22720612  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    |||||| |||||||||||||||| ||||    
T  22720613 aaagtggagttttgcttataatagtgac 22720640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 22768277 - 22768150
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    |||||| |||||  || ||| ||||||||||||||||||||||||||||   | ||||||||||||||| ||| |||||| ||||||||||||||||| |    
T  22768277 tcactactataaacaacactacactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatctaa 22768178  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    ||  || |||||||||||||||| ||||    
T  22768177 aatatggagttttgcttataatagtgac 22768150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 52673592 - 52673732
Alignment:
Q  89 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattat 188  Q
    |||||| ||| | ||||||||||||| ||||||| |||||||||||| |||||||||||||| | || ||| | || || ||  |  |||||| ||||||    
T  52673592 atactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattat 52673691  T
Q  189 tcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  52673692 tcaatgtatctaaaaagtgaaattttgcttataatagtgac 52673732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 41622106 - 41622216
Alignment:
Q  104 actattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaa 203  Q
    |||||||||||||||| |  | ||||||||||||||||||||||| | |    |||||||||||||| ||| |||||| ||| ||||||||||||| |||    
T  41622106 actattataagtaaaaatctattttttagatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatctaaaa 41622205  T
Q  204 agtgaagtttt 214  Q
    |||||| ||||    
T  41622206 agtgaactttt 41622216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 22768151 - 22768270
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||||| ||  |||||||||||||||||||||||| | || ||||| || || || ||  || ||| ||||||||||||||||| |    
T  22768151 tcactattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatctaa 22768250  T
Q  202 aaagtgaagttttgcttata 221  Q
    |||||| ||| ||| |||||    
T  22768251 aaagtgtagtgttgtttata 22768270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 49083049 - 49083171
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||| | || ||    ||||||||  ||  ||||| ||||||| ||||||||| |    
T  49083049 tcactattataagcaaaacttca-tttttagatgcattgaataattaatgtatctag----taataaagattagttacattaattatttaatgtatctaa 49083143  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    || ||||| |||||||||||||| ||||    
T  49083144 aatgtgaaattttgcttataatagtgac 49083171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 2198111 - 2198054
Alignment:
Q  172 ctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  2198111 ctatatacattaattattcaatgtatctaaaaagtggagttttgcttataatagtgac 2198054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 2198055 - 2198103
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2198055 tcactattataagcaaaactccactttttagatacattgaataattaat 2198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 44626293 - 44626168
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||||| | |   |  ||||||| || ||| |||||| | |||||||||||||||||    
T  44626293 tcactattataagtaaaacttcacttttcaaatatactgaataattaattttt--tggttataatatagactagatacattagttattcaatgtatctga 44626196  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    ||| | || ||||| |||||||| ||||    
T  44626195 aaaataaaattttgattataatagtgac 44626168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 49083170 - 49083048
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||||| |  | | ||| || ||    ||| |||||| |||||||||||| |||| |    
T  49083170 tcactattataagcaaaatttcacattttagatacattaaataattaatgtaactaatctttatta----ctagatacattaattattcaatgcatct-a 49083076  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    ||| ||||||||||||||||||| ||||    
T  49083075 aaaatgaagttttgcttataatagtgac 49083048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 6464885 - 6464998
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    |||| ||| ||||||||||||| |||||| | |||||||||||||||||| | | ||   ||||||||   ||| |||||| |||||||||| |||| |     
T  6464885 atcattatgataagtaaaactttacttttaaaatacattgaataattaatgtatacatgttataataataactagatacattaattattcaaggtatttt 6464984  T
Q  201 aaaagtgaagtttt 214  Q
    ||||||||||||||    
T  6464985 aaaagtgaagtttt 6464998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 22923666 - 22923714
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22923666 tcactattataagcaaaactccaatttttagatacattgaataattaat 22923714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 22928319 - 22928367
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22928319 tcactattataagcaaaactccaatttttagatacattgaataattaat 22928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 22984598 - 22984646
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22984598 tcactattataagcaaaactccaatttttagatacattgaataattaat 22984646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 22998186 - 22998234
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||    
T  22998186 tcactattataagcaaaactccaatttttagatacattgaataattaat 22998234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 41622224 - 41622128
Alignment:
Q  108 ttataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 204  Q
    |||||| ||||| ||||||||||||||||||||||| |||||| | || ||||| || || || |||  ||||  ||||||||||||||||| ||||    
T  41622224 ttataaataaaagttcactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaa 41622128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 15794769 - 15794819
Alignment:
Q  101 atcactattataagtaaaacttcact-ttttagatacattgaataattaat 150  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  15794769 atcactattataagtaaaatttcattgttttagatacattgaataattaat 15794819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 2198169 - 2198121
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  2198169 atcactatta-aagcaaaacttcactttttaaatacattgaataattaat 2198121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 22923718 - 22923665
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||| ||||    
T  22923718 atacattaattattcaatgtatctaaaaattggagttttgcttataatagtgac 22923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 22928371 - 22928318
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||| ||||    
T  22928371 atacattaattattcaatgtatctaaaaattggagttttgcttataatagtgac 22928318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 22984650 - 22984597
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||| ||||    
T  22984650 atacattaattattcaatgtatctaaaaattggagttttgcttataatagtgac 22984597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 22998238 - 22998185
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||| ||||    
T  22998238 atacattaattattcaatgtatctaaaaattggagttttgcttataatagtgac 22998185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 2198118 - 2198159
Alignment:
Q  177 tacatgaattattcaatgtatctgaaaagtgaagttttgctt 218  Q
    ||||| ||||||||||||||| | ||||||||||||||||||    
T  2198118 tacattaattattcaatgtatttaaaaagtgaagttttgctt 2198159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 5281268 - 5281231
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacatt 139  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  5281268 tcactaatataagtaaaaattcactttttagatacatt 5281231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 6464939 - 6464886
Alignment:
Q  175 tatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatga 228  Q
    ||||||| ||||||||||||||| | |||||| ||||||| ||||| |||||||    
T  6464939 tatacattaattattcaatgtattttaaaagtaaagttttacttatcataatga 6464886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 39396827 - 39396876
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||||||||||||  |||||||||||||||| |||||| | |||||||||    
T  39396827 atcactattataaacaaaacttcactttttaaatacatgggataattaat 39396876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 39897110 - 39897159
Alignment:
Q  96 ctctcatcactattataagtaaaacttcactttttagatacattgaataa 145  Q
    ||||| ||||||||| ||||||||  ||||||||||||| ||||||||||    
T  39897110 ctctcgtcactattagaagtaaaaaatcactttttagattcattgaataa 39897159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 44156133 - 44156092
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaat 143  Q
    |||||| |||||| |||| |||||||||||||||||||||||    
T  44156133 tcactaatataagcaaaaattcactttttagatacattgaat 44156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 50485840 - 50485791
Alignment:
Q  90 tactcactctcatcactattataagtaaaacttcactttttagatacatt 139  Q
    |||||| |||||||||||||||||   ||| |||||||||||||||||||    
T  50485840 tactcaatctcatcactattataaactaaatttcactttttagatacatt 50485791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 52299136 - 52299084
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||||| | |||||| || |||||||||||||||||||    
T  52299136 atacattaattattcaatgtat-taaaaagtaaaattttgcttataataatgac 52299084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 6131436 - 6131484
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaa 149  Q
    |||||||||||||  ||||||| |||||||| ||||||| |||||||||    
T  6131436 atcactattataatcaaaactttactttttaaatacattaaataattaa 6131484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 15794842 - 15794774
Alignment:
Q  157 agtctataataaaggctatatacatgaattattcaatgtatctgaaa-agtgaagttttgcttataata 224  Q
    |||||||||||||| | | |||||| ||||||||||||||||| ||| | |||| |||| |||||||||    
T  15794842 agtctataataaagaccagatacattaattattcaatgtatctaaaacaatgaaattttacttataata 15794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 22020110 - 22020166
Alignment:
Q  89 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataa 145  Q
    |||||| ||||  ||||||||||||| |||| |||||||||||||| |||| |||||    
T  22020110 atactccctctggtcactattataagcaaaagttcactttttagattcattcaataa 22020166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 26221156 - 26221030
Alignment:
Q  103 cactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaa 202  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||| | | |  |||||||||||  ||| |||||| ||||||||||||||||| ||    
T  26221156 cactaatataagtaaaacttcactttttagatacactgaataattaatatataccatctataataaaaactagatacattaattattcaatgtatctaaa 26221057  T
Q  203 aagtgaagttttgcttataataatgac 229  Q
    |||| |||||||| |||||||| ||||    
T  26221056 aagtaaagttttgtttataatattgac 26221030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 21032539 - 21032662
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||| | | ||||||||||||||| ||| |||||| ||||||||||| ||||| |    
T  21032539 tcactattataagcaaaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaa 21032638  T
Q  202 aaagtgaagttttgcttataataa 225  Q
    |||||  | ||||| |||||||||    
T  21032639 aaagtagaattttgtttataataa 21032662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 42364353 - 42364233
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||   | || ||| |||||||||| ||| |||||| ||||||||||||||| | |    
T  42364353 tcactattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaattattcaatgtatttaa 42364254  T
Q  202 aaagtgaagttttgcttataa 222  Q
    ||||| || ||||| ||||||    
T  42364253 aaagtaaatttttgtttataa 42364233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 29486504 - 29486627
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||| | || ||| ||| |||||| ||| ||| || |||||||||||||||||     
T  29486504 atcactattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgtatcta 29486603  T
Q  201 aaaagtgaagttttgcttataata 224  Q
    |||||| |  ||||||||||||||    
T  29486604 aaaagtcagattttgcttataata 29486627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 5240233 - 5240335
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||| || | ||||||||||||||||||||||||| | || ||| ||||||||||  || |||||| ||||||||||||||||| |    
T  5240233 tcactattataagcaaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatctaa 5240332  T
Q  202 aaa 204  Q
    |||    
T  5240333 aaa 5240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 21032643 - 21032536
Alignment:
Q  124 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataat 223  Q
    |||||||||||| |||||||||||||| | || ||||| || || || ||  |||||| ||||||||||||||| | ||||||| |||||||||||||||    
T  21032643 actttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaagtggagttttgcttataat 21032544  T
Q  224 aatgactg 231  Q
    | ||||||    
T  21032543 agtgactg 21032536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 29486632 - 29486509
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||||| | |  ||||| ||  | |  ||| |||||| |||||||||||||||||     
T  29486632 atcactattataagcaaaatctgactttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatcta 29486533  T
Q  201 aaaagtgaagttttgcttataata 224  Q
    ||| ||||| ||||||||||||||    
T  29486532 aaatgtgaaattttgcttataata 29486509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 7604194 - 7604323
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaa-ttattcaatgtatct 199  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||| ||||   || |||||||||||||| ||| || ||| || ||||||| | |||||    
T  7604194 atcactattataagcaaaatttcactttttagatatactgaataagtaatgcatcaagtctataataaagactaaatccattaatttattcagtatatct 7604293  T
Q  200 gaaaagtgaagttttgcttataataatgac 229  Q
     |||||| || |||| ||||||||||||||    
T  7604294 aaaaagtcaaattttacttataataatgac 7604323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 42364227 - 42364354
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||| ||||||  |||| || |||||||| |||||||||||||||||| | |  ||||| || || |  ||| ||||   ||||||||||||||||| |    
T  42364227 tcactgttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatctaa 42364326  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    ||||||||||||||||||||||| ||||    
T  42364327 aaagtgaagttttgcttataatagtgac 42364354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 26221035 - 26221150
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||| | || ||| | || || ||    |||| || ||||||||| ||||||| |||||    
T  26221035 tattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcagtgtatctaaaaag 26221134  T
Q  206 tgaagttttgcttata 221  Q
    ||||||||| ||||||    
T  26221135 tgaagttttacttata 26221150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 5240335 - 5240232
Alignment:
Q  126 tttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataa 225  Q
    ||||||||||||||||||||||||| | || |  || || || |  ||| |||||| ||||||||||||||||| |||| | || ||||||||||||||     
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataatag 5240236  T
Q  226 tgac 229  Q
    ||||    
T  5240235 tgac 5240232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 892560 - 892606
Alignment:
Q  104 actattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||    
T  892560 actattataagcaaaaattcactttttagattcattgaataattaat 892606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 892610 - 892562
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 224  Q
    |||||| |||||||||||| |||| ||||||||| ||||||||||||||    
T  892610 atacattaattattcaatgaatctaaaaagtgaatttttgcttataata 892562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 6834041 - 6834085
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||||||||||||| || |||||||||||| ||||||||||||||    
T  6834041 tattataagtaaaattttactttttagatatattgaataattaat 6834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 6834089 - 6834035
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgact 230  Q
    |||||| ||||||||||| ||||| |||||| || |||| |||||||||||||||    
T  6834089 atacattaattattcaatatatctaaaaagtaaaattttacttataataatgact 6834035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 35969263 - 35969225
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacatt 139  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  35969263 atcactaatataagtaaaaattcactttttagatacatt 35969225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1098634 - 1098678
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataa 145  Q
    ||||||||||||||||||| || ||||||||||| |||| |||||    
T  1098634 atcactattataagtaaaagttgactttttagattcattcaataa 1098678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 36864556 - 36864512
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataa 145  Q
    ||||||||||||| ||||| |||||||||||||| |||| |||||    
T  36864556 atcactattataaataaaagttcactttttagattcattcaataa 36864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 6197959 - 6197832
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||||||| | |  | ||||| |||||| ||| |||||| || |||| ||||||||| |    
T  6197959 tcactattataagcaaaactttactttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatctaa 6197860  T
Q  202 aaagtgaagttttgcttataataatgac 229  Q
    |||||| |||||||||||||||||||||    
T  6197859 aaagtggagttttgcttataataatgac 6197832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 13325116 - 13325225
Alignment:
Q  116 aaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttg 215  Q
    ||||||||| ||||||||||||||||||||||||| | || ||| |||||||    ||| ||||||  |||||||||| || || ||||||||||||||     
T  13325116 aaaacttcaatttttagatacattgaataattaatgtatctagtttataata----ctaaatacattgattattcaatatacctaaaaagtgaagttttc 13325211  T
Q  216 cttataataatgac 229  Q
    ||||||||||||||    
T  13325212 cttataataatgac 13325225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 6197837 - 6197960
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||| |||||| ||||||||||||||||| |||| ||||| | || ||||| ||  | ||  || |||||| ||||||| ||||||||| |||||    
T  6197837 tattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatctaaaaag 6197936  T
Q  206 tgaagttttgcttataataatgac 229  Q
    | ||||||||||||||||| ||||    
T  6197937 taaagttttgcttataatagtgac 6197960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 27939124 - 27938998
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    |||||||||| ||||||| || | ||||||||||||||||||||| ||| |  |||||||||||||||| ||| ||||||  ||||||||||| |  |      
T  27939124 tcactattatgagtaaaattttattttttagatacattgaataatgaatgtacccagtctataataaagactagatacattgattattcaatgcacttat 27939025  T
Q  202 aaagtgaagttttgcttataataatga 228  Q
    |||||| |||||| ||||| |||||||    
T  27939024 aaagtggagttttacttatgataatga 27938998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 11322569 - 11322690
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    |||||| ||||||| |||| | |||||||||||| ||||||||||||||| | |||  ||||||||||||  |  ||| || ||||||||||| |||||     
T  11322569 atcactgttataagaaaaagt-cactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatcta 11322667  T
Q  201 aaaagtgaagttttgcttataata 224  Q
    |||| || ||||||||||||||||    
T  11322668 aaaattg-agttttgcttataata 11322690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 13325220 - 13325116
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||| ||||||||||||||||| || |||||||||| ||| | |  ||  ||| |||||  ||| |||||| ||||||||||||||||| ||||     
T  13325220 tattataaggaaaacttcactttttaggtatattgaataatcaatgtatttag--tattataaa--ctagatacattaattattcaatgtatctaaaaat 13325125  T
Q  206 tgaagtttt 214  Q
    |||||||||    
T  13325124 tgaagtttt 13325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 11322695 - 11322589
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    |||||||||||||| |||||| || |||||||||| |||||||||||||| | |||| ||| || || ||     |||||| |||||||||||| ||||     
T  11322695 atcactattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagatcggatacattaattattcaatgcatcta 11322597  T
Q  201 aaaagtga 208  Q
    ||||||||    
T  11322596 aaaagtga 11322589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 158486 - 158444
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgctt 218  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||    
T  158486 atacattaattattcaatgtatctaaaaagtgaaattttgctt 158444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 158448 - 158482
Alignment:
Q  116 aaaacttcactttttagatacattgaataattaat 150  Q
    |||| ||||||||||||||||||||||||||||||    
T  158448 aaaatttcactttttagatacattgaataattaat 158482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 1214067 - 1214021
Alignment:
Q  104 actattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||||||||| |||||||  |||||||||||| ||||||||||||||    
T  1214067 actattataaataaaactctactttttagatatattgaataattaat 1214021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 43140629 - 43140681
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| |||||||||| |||||| |||| |||||||||| |||||||||||||    
T  43140629 atacattaattattcaa-gtatctaaaaaatgaagttttgtttataataatgac 43140681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 28205857 - 28205809
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 224  Q
    |||||| |||||||||||||||||||||| | || ||||| ||||||||    
T  28205857 atacattaattattcaatgtatctgaaaaattaaattttgtttataata 28205809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 43140553 - 43140601
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||  ||||| | |||| ||||||||||||||||||||||    
T  43140553 tcactattataaacaaaacattacttattagatacattgaataattaat 43140601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 4132516 - 4132392
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatct-gaaaa 204  Q
    ||||||||  ||||||| ||||||||||||||||||||| ||||| | |  |||||||||||||  |||||||||| |||||||||||||||||  ||||    
T  4132516 tattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatgtatctaaaaaa 4132417  T
Q  205 gtgaagttttgcttataataatgac 229  Q
    ||||| |||||||||||||| ||||    
T  4132416 gtgaaattttgcttataatattgac 4132392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 4132397 - 4132521
Alignment:
Q  106 tattataagtaaaacttcacttttt-agatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 204  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||| | |  ||| | || || || ||| |||||| || |||||||||||||| ||||    
T  4132397 tattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatctaaaaa 4132496  T
Q  205 gtgaagttttgcttataataatgac 229  Q
    || |||||||| |||||||||||||    
T  4132497 gttaagttttgtttataataatgac 4132521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 38646315 - 38646177
Alignment:
Q  87 atatactcactctcatcactattataagtaaaacttcactttttagatacattgaataatt-aatctgtccagtctataataaaggctatatacatgaat 185  Q
    |||||||| ||||  ||||||||||||| ||||||||||| |||||||| ||||||||||| ||| | | | |||||||| |||   || ||| || |||    
T  38646315 atatactccctctggtcactattataagcaaaacttcactatttagatatattgaataatttaatgtattcggtctataacaaaaattaaatatattaat 38646216  T
Q  186 tattcaatgtatctgaaaagtgaagttttgcttataata 224  Q
    |||||||||||||| ||||||  |||||| |||||||||    
T  38646215 tattcaatgtatctaaaaagttgagttttacttataata 38646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 229
Target Start/End: Complemental strand, 41115698 - 41115556
Alignment:
Q  87 atatactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaatt 186  Q
    |||||||| ||||  | ||||||||||||||||||| | |||||| |||||||  ||||||||| | || | ||||||||||||  || |||||| ||||    
T  41115698 atatactctctctggtaactattataagtaaaacttaattttttatatacattacataattaatgtatctactctataataaagattagatacattaatt 41115599  T
Q  187 attcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
     ||||||||||||  |||||  |||||| |||||||| |||||    
T  41115598 gttcaatgtatctacaaagtacagttttacttataatgatgac 41115556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 26982771 - 26982819
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26982771 tcactattataagcaaaacttcactttttagatacattgaataattaat 26982819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 26982823 - 26982770
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  26982823 atacattaattattcaatgtatctaaaaagtgaagttttgcttataatagtgac 26982770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 43250417 - 43250474
Alignment:
Q  173 tatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgact 230  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  43250417 tatatacattaattattcaatgtatctaaaaagtaaagttttgcttataatagtgact 43250474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 45578005 - 45578066
Alignment:
Q  89 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  45578005 atactctctctagtcactattataagtaaaatttcactttttagatacattgaacaattaat 45578066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 43250472 - 43250424
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  43250472 tcactattataagcaaaactttactttttagatacattgaataattaat 43250424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 38646175 - 38646221
Alignment:
Q  104 actattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||    
T  38646175 actattataagtaaaactcaactttttagatacattgaataattaat 38646221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 43250376 - 43250418
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaata 144  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  43250376 tcactattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 21857076 - 21857124
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||| || |||||||||| ||||||||||||||||    
T  21857076 tcactattataagcaaaagtttactttttagacacattgaataattaat 21857124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 45578072 - 45578016
Alignment:
Q  174 atatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgact 230  Q
    |||||||| |||| |||||||||||| ||||||||| |||| ||||||||| |||||    
T  45578072 atatacattaattgttcaatgtatctaaaaagtgaaattttacttataatagtgact 45578016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 43250418 - 43250375
Alignment:
Q  186 tattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataatagtgac 43250375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 38646255 - 38646301
Alignment:
Q  183 aattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    ||||||||||| ||||| || ||||||||||||||||||||| ||||    
T  38646255 aattattcaatatatctaaatagtgaagttttgcttataatagtgac 38646301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 21587894 - 21587841
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||| |||| ||||  ||||||||||||||||||||||| ||||    
T  21587894 atacattaattatttaatgcatcttgaaagtgaagttttgcttataatagtgac 21587841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 21857128 - 21857075
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| ||||||||||||| ||| |||||| || |||||||||||||| ||||    
T  21857128 atacattaattattcaatgtgtctaaaaagtaaacttttgcttataatagtgac 21857075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 24155691 - 24155642
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||||||| ||||  ||||||||| |||||||||||||| ||||||||||    
T  24155691 atcactatcataaacaaaacttcaatttttagatacattaaataattaat 24155642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 34840673 - 34840620
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    |||||| | ||||| |||| |||| ||||||||| |||||||||||||||||||    
T  34840673 atacatcatttattgaatgaatctaaaaagtgaacttttgcttataataatgac 34840620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 41115562 - 41115679
Alignment:
Q  107 attataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagt 206  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||| | || | ||| || || ||  || |||||| ||||||  ||||||| | |||| |    
T  41115562 attataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatataaaaaat 41115661  T
Q  207 gaagttttgcttataata 224  Q
     ||||||| |||||||||    
T  41115662 taagttttacttataata 41115679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 21587842 - 21587890
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||||||||||||  |||| |||| ||||||||||    
T  21587842 tcactattataagcaaaacttcactttcaagatgcattaaataattaat 21587890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 21857219 - 21857171
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||| |||| |||||||| | ||||||||||||||    
T  21857219 tcactattataagcaaaaattcattttttagacatattgaataattaat 21857171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 30457864 - 30457820
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataa 145  Q
    ||||||||||||||||||| ||||||||||| || |||| |||||    
T  30457864 atcactattataagtaaaagttcactttttaaattcattcaataa 30457820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 34703509 - 34703569
Alignment:
Q  161 tataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttata 221  Q
    |||||||||| | |||||||| | | ||| ||||||||| ||||||||| |||||||||||    
T  34703509 tataataaagaccatatacatcattaattgaatgtatctaaaaagtgaatttttgcttata 34703569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 40416972 - 40417032
Alignment:
Q  161 tataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttata 221  Q
    |||||||||| | |||||||| | | ||| ||||||||| ||||||||| |||||||||||    
T  40416972 tataataaagaccatatacatcattaattgaatgtatctaaaaagtgaatttttgcttata 40417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 8352129 - 8352269
Alignment:
Q  89 atactcactctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattat 188  Q
    |||||| ||||  ||||||||||||| ||||||||| |||||||||||||||||| |||||| | || | | | || || ||  || |||||| ||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattat 8352228  T
Q  189 tcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    ||||| ||||| ||||| |||||||||||||||||||||||    
T  8352229 tcaatatatctaaaaagggaagttttgcttataataatgac 8352269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 8352264 - 8352141
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| | |  | |||||||||||   || |||||| ||| ||||||||||||| ||||     
T  8352264 tattataagcaaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatctaaaaaa 8352165  T
Q  206 tgaagttttgcttataataatgac 229  Q
    ||||||||||||||||||| ||||    
T  8352164 tgaagttttgcttataatagtgac 8352141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 26468419 - 26468289
Alignment:
Q  110 ataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaa 209  Q
    |||||||||| ||||||||||  ||||||||||||||| || | |   ||||||||||||   || |||||| ||||||||||||||| | |||||||||    
T  26468419 ataagtaaaatttcactttttttatacattgaataattgatatatatggtctataataaaaattagatacattaattattcaatgtatttaaaaagtgaa 26468320  T
Q  210 gttttgcttataataatgactgaatgtagta 240  Q
     ||||| |||||||| |||| ||||| ||||    
T  26468319 attttgtttataatagtgaccgaatggagta 26468289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 31635871 - 31635757
Alignment:
Q  109 tataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtga 208  Q
    |||||| |||| ||||||||||||||||||||||||| |||| | || ||||||||||||   |   ||||||  |||||||||||||| | ||||||||    
T  31635871 tataagcaaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtatataaaaagtga 31635772  T
Q  209 agttttgcttataat 223  Q
    |||||| ||| ||||    
T  31635771 agttttacttgtaat 31635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 14773765 - 14773852
Alignment:
Q  137 attgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 224  Q
    |||||||||||| | | |||||||||||||| || ||| |||||| |||||| |||| ||||| |||||| || ||||||||||||||    
T  14773765 attgaataattattgtatccagtctataatacagactagatacattaattatacaatatatctaaaaagttaaattttgcttataata 14773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 31635752 - 31635871
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    |||| |||| |||||||||||||||||||| |||||||||||||| ||| | | | ||   || || || ||| ||| || | ||||||||||||||| |    
T  31635752 tcaccattacaagtaaaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaa 31635851  T
Q  202 aaagtgaagttttgcttata 221  Q
    |||||||| |||||||||||    
T  31635852 aaagtgaaattttgcttata 31635871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 43731248 - 43731130
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||| |||| |||| ||||||||||||||||||| ||||| | || | | | |||||||  ||| |||||| ||||||| ||||||||| | | |    
T  43731248 tattataagcaaaatttcattttttagatacattgaatagttaatgtatctattttttaataaaaactagatacattaattattgaatgtatcttacatg 43731149  T
Q  206 tgaagttttgcttataata 224  Q
    | || ||||||||||||||    
T  43731148 taaatttttgcttataata 43731130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 26468301 - 26468419
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||  |||| ||||||||||| |||||||||||||||||| | || | | | || || || | ||||| || |||||||||||||||   |    
T  26468301 tcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattattcaatgtataaaa 26468400  T
Q  202 aaagtgaagttttgcttat 220  Q
    |||||||| |||| |||||    
T  26468401 aaagtgaaattttacttat 26468419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 43731128 - 43731250
Alignment:
Q  104 actattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaa 203  Q
    ||||||||||| |||| || || | | ||||||||| |||||||||| | || ||| | || ||||   || |||||| || |||||||||||||| |||    
T  43731128 actattataagcaaaaatttacatgtaagatacattcaataattaatgtatctagtttttattaaaaaatagatacattaactattcaatgtatctaaaa 43731227  T
Q  204 agtgaagttttgcttataataat 226  Q
    | |||| ||||||||||||||||    
T  43731228 aatgaaattttgcttataataat 43731250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 30800186 - 30800254
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaag 170  Q
    ||||| ||||||  |||| || ||||| |||||||||||||| |||||| | |||||||||||||||||    
T  30800186 tcactcttataaacaaaattttactttctagatacattgaatgattaatgtatccagtctataataaag 30800254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 897120 - 897042
Alignment:
Q  126 tttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 204  Q
    ||||||||||||||||||||||||| | |||  | || ||| ||| ||| |||||| ||||||| ||||||||| ||||    
T  897120 tttttagatacattgaataattaatgtatcccatttacaatgaagactaaatacattaattattaaatgtatctaaaaa 897042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 39940620 - 39940571
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||||||||| || ||||||||||| |||| ||||| ||||    
T  39940620 atcactattataagtaaaaatttactttttagattcattcaataaataat 39940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 10256787 - 10256831
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataa 145  Q
    |||||||||||||| |||| |||||||||||||| |||| |||||    
T  10256787 atcactattataagaaaaaattcactttttagattcattcaataa 10256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 8996792 - 8996887
Alignment:
Q  134 tacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||||  ||||||||||||||||  |||||  |||||||||||||||| ||||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtgac 8996887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 8717643 - 8717540
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctg 200  Q
    ||||||||||||||| ||| || | |||||| ||||||||||||| |||| | || ||| |||||||||| ||| |||||| ||||||| |||||||||     
T  8717643 atcactattataagttaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatcta 8717544  T
Q  201 aaaa 204  Q
    ||||    
T  8717543 aaaa 8717540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 20218679 - 20218550
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| || |  ||||||||||||| |||||||||||| || | ||||||||||||||  | ||  ||||||   |||||||||| | || |    
T  20218679 tcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtctataatactgactgcatacatcggttattcaatgaaactaa 20218580  T
Q  202 aaagtgaagttttgcttataataatgactg 231  Q
    ||||||   |||||||||||||| ||||||    
T  20218579 aaagtgtttttttgcttataatagtgactg 20218550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 10495777 - 10495729
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  10495777 tcactattataagcaaaatttcactttttagatacattgaatatttaat 10495729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 43100756 - 43100804
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  43100756 tcactattataagcaaaaattcattttttagatacattgaataattaat 43100804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 10495725 - 10495792
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataataatgactgaatgtagtatat 243  Q
    |||||| || |||||||||||||| ||||||||| |||||||||||||| |||| | ||| |||||||    
T  10495725 atacattaaatattcaatgtatctaaaaagtgaaattttgcttataatagtgaccggatgaagtatat 10495792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 8996729 - 8996791
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctat 163  Q
    |||||||||||||| |||| |||  ||||||||||||||||||||||||| | || |||||||    
T  8996729 atcactattataagcaaaatttcggtttttagatacattgaataattaatgtatctagtctat 8996791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 8996886 - 8996792
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgta 196  Q
    ||||||||||||| ||||||  ||||| ||||||||||||||||| ||| | |  ||||| || || || ||| |||||| ||||||||||||||    
T  8996886 tcactattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaattattcaatgta 8996792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 13953899 - 13953774
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatct-g 200  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| ||| | || | | |||||||||| ||||||| |  ||||||| ||| |||||      
T  13953899 tcactattataaacaaaacttcacattttagatacattagataatcaatatatctaatttataataaagactatatagactaattatttaatatatctaa 13953800  T
Q  201 aaaagtgaagttttgcttataataat 226  Q
    |||| | || ||||||||||||||||    
T  13953799 aaaaataaaattttgcttataataat 13953774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 14095106 - 14094981
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatct-g 200  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| ||| | || | | |||||||||| ||||||| |  ||||||| ||| |||||      
T  14095106 tcactattataaacaaaacttcacattttagatacattagataatcaatatatctaatttataataaagactatatagactaattatttaatatatctaa 14095007  T
Q  201 aaaagtgaagttttgcttataataat 226  Q
    |||| | || ||||||||||||||||    
T  14095006 aaaaataaaattttgcttataataat 14094981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 39792211 - 39792136
Alignment:
Q  119 acttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatg 194  Q
    |||||| |||||||||||| |||||||||||| | || | |||||||||||  ||| |||||| ||||||| ||||    
T  39792211 acttcattttttagatacaatgaataattaatgtatctaatctataataaaaactagatacattaattatttaatg 39792136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 43100801 - 43100755
Alignment:
Q  183 aattattcaatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    ||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  43100801 aattattcaatgtatctaaaaaatgaatttttgcttataatagtgac 43100755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 8996782 - 8996734
Alignment:
Q  176 atacatgaattattcaatgtatctgaaaagtgaagttttgcttataata 224  Q
    |||||| ||||||||||||||||| ||||  ||| ||||||||||||||    
T  8996782 atacattaattattcaatgtatctaaaaaccgaaattttgcttataata 8996734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 50335053 - 50334932
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||| |||| || | |||||||||| |||||||||||||| | | ||  |||||||||||  || |||||| ||||||||||||||||| |    
T  50335053 tcactattataagcaaaattt-attttttagatatattgaataattaatgtatacaacctataataaagattagatacattaattattcaatgtatctaa 50334955  T
Q  202 aaagtgaagttttgcttataata 224  Q
    || ||||||||||| ||||||||    
T  50334954 aatgtgaagttttgtttataata 50334932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 35239682 - 35239787
Alignment:
Q  124 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataat 223  Q
    ||||||||||||||||||||||||||| | |  |||||||||||||| ||| |||||| || |||||||||||||| ||| || || ||||| |||||||    
T  35239682 actttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaatgtcaaattttggttataat 35239781  T
Q  224 aatgac 229  Q
    | ||||    
T  35239782 agtgac 35239787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 29497369 - 29497471
Alignment:
Q  104 actattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaa 203  Q
    ||||||||||| |||| || |||||||||||||||||| |||||||| | | ||||||| ||||||| ||| ||| || |||| |||||||||||| |||    
T  29497369 actattataagcaaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatctaaaa 29497468  T
Q  204 agt 206  Q
    |||    
T  29497469 agt 29497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 50334932 - 50335054
Alignment:
Q  106 tattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaag 205  Q
    ||||||||  |||||||||| |||||||||||||||||||||||| | || | ||| || || ||| | ||||||| ||||||||||| ||||| ||||     
T  50334932 tattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatatatctaaaaaa 50335031  T
Q  206 tgaagttttgcttataataatgac 229  Q
    | || |||||||||||||| ||||    
T  50335032 t-aaattttgcttataatagtgac 50335054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 32711319 - 32711221
Alignment:
Q  122 tcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttat 220  Q
    ||||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||| |||||||||||| | || ||||||||  ||||||||||    
T  32711319 tcactttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaaagtgactttttgcttat 32711221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 29497471 - 29497371
Alignment:
Q  124 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaagtgaagttttgcttataat 223  Q
    ||||||||||||||||||| ||||||| | || ||||| || |  || ||  |||||| ||||| ||||||||||| |||||| || |||||||||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  224 a 224  Q
    |    
T  29497371 a 29497371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 35239786 - 35239682
Alignment:
Q  102 tcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctga 201  Q
    ||||||||||||  |||| || || |||||||||||||||||| ||||| | || ||||| || || || ||  |||||| ||||||||||||||||| |    
T  35239786 tcactattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaattattcaatgtatctaa 35239687  T
Q  202 aaagt 206  Q
    |||||    
T  35239686 aaagt 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 53711998 - 53711868
Alignment:
Q  97 tctcatcactattataagtaaaacttcactttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgta 196  Q
    |||| ||||||| |||||||||| || | |||||| ||| |||||||||||||  | || ||||||||  ||||   | |||||| ||||||| || |||    
T  53711998 tctcgtcactatcataagtaaaatttaa-tttttatatatattgaataattaacgtatctagtctatatgaaagatcaaatacattaattatttaaagta 53711900  T
Q  197 tctgaaaagtgaagttttgcttataataatga 228  Q
    | | ||||||||| |||| |||||||||||||    
T  53711899 tttaaaaagtgaaattttacttataataatga 53711868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 42912351 - 42912385
Alignment:
Q  105 ctattataagtaaaacttcactttttagatacatt 139  Q
    |||||||||| ||||||||||||||||||||||||    
T  42912351 ctattataagcaaaacttcactttttagatacatt 42912385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 42912385 - 42912352
Alignment:
Q  191 aatgtatctgaaaagtgaagttttgcttataata 224  Q
    ||||||||| ||||||||||||||||||||||||    
T  42912385 aatgtatctaaaaagtgaagttttgcttataata 42912352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 53711867 - 53711916
Alignment:
Q  101 atcactattataagtaaaacttcactttttagatacattgaataattaat 150  Q
    |||| |||||||||||||| ||||||||||| |||| || ||||||||||    
T  53711867 atcattattataagtaaaatttcactttttaaatactttaaataattaat 53711916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 48593175 - 48593255
Alignment:
Q  124 actttttagatacattgaataattaatctgtccagtctataataaaggctatatacatgaattattcaatgtatctgaaaa 204  Q
    |||||||||||||||||||||||| || | ||  ||||| |||| || | | |||||| |||||||||||| |||| ||||    
T  48593175 actttttagatacattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaa 48593255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 33971 - 34009
Alignment:
Q  191 aatgtatctgaaaagtgaagttttgcttataataatgac 229  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  33971 aatgtatctaaaaagtgaagttttgcttgtaataatgac 34009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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