View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6940_low_32 (Length: 261)
Name: NF6940_low_32
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 31524415 - 31524189
Alignment:
| Q |
22 |
atgcggaccacctatttgtcttaagcccccatgttgccttccccctccttcatccagtgatataaatccctaaagttgtgttgctcttctactagtttta |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524415 |
atgcggaccacctatttgtcttaagcccccatgttgcctcccccct---tcatccagtgatataaatccctaaagttgtgttgctcttctactagtttta |
31524319 |
T |
|
| Q |
122 |
caccaatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524318 |
caccaatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatat |
31524219 |
T |
|
| Q |
222 |
ataatttatgttacttttaatgtatctctg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31524218 |
ataatttatgttacttttaatgtatctctg |
31524189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 31515667 - 31515441
Alignment:
| Q |
22 |
atgcggaccacctatttgtcttaagcccccatgttgccttccccctccttcatccagtgatataaatccctaaagttgtgttgctcttctactagtttta |
121 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31515667 |
atgcggaccacctatttgtcttaagtcctcatgttgcctcccccct---tcatccagtgatataaatccctaaagttgtgttgcacttctactagtttta |
31515571 |
T |
|
| Q |
122 |
caccaatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31515570 |
caccaatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttgataaattatatgtaataatcgctccaaatcatat |
31515471 |
T |
|
| Q |
222 |
ataatttatgttacttttaatgtatctctg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31515470 |
ataatttatgttacttttaatgtatctctg |
31515441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 31522069 - 31521872
Alignment:
| Q |
22 |
atgcggaccacctatttgtcttaagcccccatgttgccttccccctccttcatccagtgatataaatccctaaagttgtgttgctcttctactagtttta |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
31522069 |
atgcggaccacctatttgtcttaagcccccatgctgcctcccccc--cttcatccagtgatataaatccctaaagttgtgctgatcttctactagtttta |
31521972 |
T |
|
| Q |
122 |
caccaatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatat |
221 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
31521971 |
caccaatcaattgtattcgagaaaatctaatatcatatcaaataatcatcttaataagattggttgataaattatatgtaataaccgctccaaatcatat |
31521872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 28043039 - 28043084
Alignment:
| Q |
162 |
aataatcatcttaataagattggttaataaattatatgtaataatc |
207 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
28043039 |
aataattatattaataagattggttaataaactatatttaataatc |
28043084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University