View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_33 (Length: 255)
Name: NF6940_low_33
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 33707548 - 33707332
Alignment:
| Q |
25 |
tccatgtcctttccactcaaacaacctggctacaaaaatttggtttaatctattgtaagtttttaacatggtctgaatctataatgtcttctcaataatt |
124 |
Q |
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| T |
33707548 |
tccatgtcctttccactcaaacaacctggctaaaacaagttggttgagtctattgtaagtttttaaaatggtctgaatctataatttcttctcaataatt |
33707449 |
T |
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| Q |
125 |
ttgactcaactaagtcctttaaggaatcaagtgtttaatgtctctttaaacccttttttgnnnnnnnggttgttgtcactattgggccgattacgacaga |
224 |
Q |
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| T |
33707448 |
ttgactcaactaagttctttaaggaatcaagtgtttaatgtctctttaaacccttttttgaaaaaaa-gttgttgtcactattgggccgattacgacaga |
33707350 |
T |
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| Q |
225 |
gattgagtttgtatttga |
242 |
Q |
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| T |
33707349 |
gattgagtttgtatttga |
33707332 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 35036051 - 35036097
Alignment:
| Q |
126 |
tgactcaactaagtcctttaaggaatcaagtgtttaatgtctcttta |
172 |
Q |
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| T |
35036051 |
tgactcaactgagtcctttgaggagtcaagtgtttaatgtctcttta |
35036097 |
T |
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