View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_35 (Length: 249)
Name: NF6940_low_35
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 794844 - 794602
Alignment:
| Q |
1 |
ttcaaaaataatagtagaagcatttgacataaatggtataaaaagtaacacaaccaannnnnnnnnngtgacttaaaatttcttctaaactttaatttnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| |
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| T |
794844 |
ttcaaaaataatagtagaagcatttgacataaatggtataaaaagtaacacagccaattttttttttgtgacttataatttcttctaaactttaatttaa |
794745 |
T |
|
| Q |
101 |
nnnnnttaatggttcnnnnnnnn-accaattcactctgtgaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcac |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
794744 |
aaaaattaatggttctatttttttaccaattcactctgtgaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcac |
794645 |
T |
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| Q |
200 |
acttctttc----tcatttaggtttttattggttcttcttcat |
238 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| |
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| T |
794644 |
acttctttctctttcatttaggtttttattgtttcttcttcat |
794602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4056377 - 4056136
Alignment:
| Q |
1 |
ttcaaaaataatagtagaagcatttgacataaatggtataaaaagtaacacaaccaannnnnnnnnngtgacttaaaatttcttctaaactttaatttnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
4056377 |
ttcaaaaataatagtagaagcatttgacataaatggtataaaaagtaacacagccaattttttttt-gtgacttaaaatttcttctaaactttaatttaa |
4056279 |
T |
|
| Q |
101 |
nnnnntt-aatggttcnnnnnnnnaccaattcactctgtgaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcac |
199 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4056278 |
aaaaatttaatggttcttttttttaccaattcactctgtgaaatagatctataaattaggtatattggttagtataatttcacatcacaacttcaatcac |
4056179 |
T |
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| Q |
200 |
acttctttc----tcatttaggtttttattggttcttcttcat |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
4056178 |
acttctttctctttcatttaggtttttattggttcttcttcat |
4056136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 25067430 - 25067671
Alignment:
| Q |
1 |
ttcaaaaataatagtagaagcatttgacataaatggtataaaaagtaacacaaccaannnnnnnnnngtgacttaaaatttcttctaaactttaatttnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
25067430 |
ttcaaaaataatagtagaagcatttgacataaatggtataaaaagtaacacagccaattttttttt-gtgacttaaaatttcttctaaactttaatttaa |
25067528 |
T |
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| Q |
101 |
nnnnntt-aatggttcnnnnnnnnaccaattcactctgtgaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcac |
199 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25067529 |
aaaaatttaatggttcttttttttaccaattcactctgtgaaatagatctataaattaggtatattggttagtataatttcacatcacaacttcaatcac |
25067628 |
T |
|
| Q |
200 |
acttctttc----tcatttaggtttttattggttcttcttcat |
238 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
25067629 |
acttctttctctttcatttaggtttttattggttcttcttcat |
25067671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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