View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6940_low_36 (Length: 248)
Name: NF6940_low_36
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_36 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14589529 - 14589300
Alignment:
| Q |
1 |
atgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14589529 |
atgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttcccat |
14589430 |
T |
|
| Q |
101 |
ttctttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctc |
200 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14589429 |
ttctttggcattgttcc-tgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctggctc |
14589331 |
T |
|
| Q |
201 |
actccttggtacctcaacagccactttcttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14589330 |
actccttggtacctcaacagccactttcttt |
14589300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 14623183 - 14622958
Alignment:
| Q |
5 |
ttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttct |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14623183 |
ttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatgtct |
14623084 |
T |
|
| Q |
105 |
ttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctcactc |
204 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14623083 |
ttggcattgttcc-tgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctggctcactc |
14622985 |
T |
|
| Q |
205 |
cttggtacctcaacagccactttcttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14622984 |
cttggtacctcaacagccactttcttt |
14622958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 12847080 - 12846855
Alignment:
| Q |
5 |
ttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttct |
104 |
Q |
| |
|
|||||| || |||||||| ||| |||||||||||| |||||||||| || |||||||| |||||||| ||||||||||| | || ||| ||||| ||| |
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|
| T |
12847080 |
ttaattctcagaatgaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctct |
12846981 |
T |
|
| Q |
105 |
ttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctcactc |
204 |
Q |
| |
|
|| ||||| || |||||||||| ||||||| |||||| |||| | |||||||||||| || ||| |||||||| ||| || |||||| |||||| |
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| T |
12846980 |
tttgcattgtt-cctgtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcactt |
12846882 |
T |
|
| Q |
205 |
cttggtacctcaacagccactttcttt |
231 |
Q |
| |
|
||||| ||||||| |||||||||||| |
|
|
| T |
12846881 |
cttggaacctcaatggccactttcttt |
12846855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 51369347 - 51369576
Alignment:
| Q |
1 |
atgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| || || |||| ||||||||||| ||||||||||||||||||||| | || |||||||| |
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|
| T |
51369347 |
atgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccat |
51369446 |
T |
|
| Q |
101 |
ttctttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctc |
200 |
Q |
| |
|
||||| |||||||||| || | | || ||||||||||||||||||||||||||||||||||| || ||| |||||||| ||| || ||||||| |||| |
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|
| T |
51369447 |
atctttagcatttttcc-tgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctc |
51369545 |
T |
|
| Q |
201 |
actccttggtacctcaacagccactttcttt |
231 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
51369546 |
actccttggtacttcaacagccactttcttt |
51369576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29955106 - 29954877
Alignment:
| Q |
1 |
atgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccat |
100 |
Q |
| |
|
||||||||||| | || |||||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| | ||||||| |||| |
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|
| T |
29955106 |
atgcttaattgacataacgaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccat |
29955007 |
T |
|
| Q |
101 |
ttctttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctc |
200 |
Q |
| |
|
||||||||||| || || || |||||||||||||||||||||||| ||||||||||||||| || | |||||||| ||| || ||||||| |||| |
|
|
| T |
29955006 |
atctttggcattatt-ccgatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctc |
29954908 |
T |
|
| Q |
201 |
actccttggtacctcaacagccactttcttt |
231 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |
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|
| T |
29954907 |
actccttggtacctcaattgccaccttcttt |
29954877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 11532406 - 11532190
Alignment:
| Q |
14 |
ggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattt |
113 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||| |
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|
| T |
11532406 |
ggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggcattg |
11532307 |
T |
|
| Q |
114 |
ttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctcactccttggtacc |
213 |
Q |
| |
|
|| | |||| |||||||||||||||||| ||||||||||||||||||||| || || |||||||| ||| || ||| ||| |||||||||||||||| |
|
|
| T |
11532306 |
tttc-tgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggtacc |
11532208 |
T |
|
| Q |
214 |
tcaacagccactttcttt |
231 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
11532207 |
tcaatagccactttcttt |
11532190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 20493241 - 20493015
Alignment:
| Q |
1 |
atgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacctttcccat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
20493241 |
atgcttaattgttggaatgaactctatgtttttggagagcatcaatgaaacctttaatgtattcattgtgaagatcttttgaaccgaaaatctttcccat |
20493142 |
T |
|
| Q |
101 |
ttctttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctagctc |
200 |
Q |
| |
|
|||||||||||||| | | || |||||||||||||||||||||||| |||||||||||||||| || | | |||||||| ||| || ||||||| |||| |
|
|
| T |
20493141 |
atctttggcattttttc-tatagatacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttgctc |
20493043 |
T |
|
| Q |
201 |
actccttggtacctcaacagccactttc |
228 |
Q |
| |
|
| ||||||||||||||| ||||| |||| |
|
|
| T |
20493042 |
attccttggtacctcaatagccaatttc |
20493015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 1355511 - 1355341
Alignment:
| Q |
60 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaat |
159 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| ||||| |||| || || ||||||||||||||||||| ||| ||||||||||| |
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|
| T |
1355511 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactctttagcattgttcc-tgaaactacttccttcctcatccacaattgccaacctcaat |
1355413 |
T |
|
| Q |
160 |
gttttagcaacacagtccctattaatggccccatctagctcactccttggtacctcaacagccactttcttt |
231 |
Q |
| |
|
| | ||| ||| |||||||| ||| | ||||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
1355412 |
gagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacttcaacagccacttccttt |
1355341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 1362397 - 1362233
Alignment:
| Q |
60 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcatttttccctgtaaatacttccttcctcatccactattaccaacctcaat |
159 |
Q |
| |
|
|||| ||| |||| |||||||||||| | ||| || |||| ||||| ||||| |||| || || ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1362397 |
tattgattatgaatatcttttgaactgaaaactttccccaactctttagcattgttcc-tgaaactacttccttcctcatccacaattgccaacctcaat |
1362299 |
T |
|
| Q |
160 |
gttttagcaacacagtccctattaatggccccatctagctcactccttggtacctcaacagccact |
225 |
Q |
| |
|
| | ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1362298 |
gagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccact |
1362233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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