View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6940_low_38 (Length: 240)
Name: NF6940_low_38
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47126620 - 47126842
Alignment:
| Q |
1 |
cctaaatgctgccaatggttcagcgtctgcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaacttctatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126620 |
cctaaatgctgccaatggttcagcgtctgcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaacttctatc |
47126719 |
T |
|
| Q |
101 |
aatgacacaccaagaagagtttggaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126720 |
aatgacacaccaagaagagtttggaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgct |
47126819 |
T |
|
| Q |
201 |
caggcataaacctacgactaacc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47126820 |
caggcataaacctacgactaacc |
47126842 |
T |
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